View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13635_high_1 (Length: 735)

Name: NF13635_high_1
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13635_high_1
NF13635_high_1
[»] chr4 (1 HSPs)
chr4 (23-718)||(37887409-37888097)


Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 23 - 718
Target Start/End: Complemental strand, 37888097 - 37887409
Alignment:
Q  23 tataaaattaacaaaagatgcaaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37888097 tataaaattaacaaaagatgcaaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagt 37887998  T
Q  123 ataggaaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887997 ataggaaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaac 37887898  T
Q  223 annnnnnnnnnnnnnnnnngttaagacatcattcatcagttatcactttcttctcttgatcatcctggctttaacaggaggcaagggagatgtagctcta 322  Q
    |                  ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37887897 a--atatatacatatatatgttaagatatcattcatcggttatcattttcttctcttgatcatcctggctttaacaggaggcaaaggagatgtagctcta 37887800  T
Q  323 tataactcatcaatattaacgtaacgataccttttatttgttcttgcaacgcaactttcagaatctgacaaaacagtagatgatgatacagcatcaccac 422  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37887799 tataactcatcaatattaacgtaacgatacctcttatttgttcttgcaaagcaactttcagaatctgacaaaacagtagatgatgatacaacatcaccac 37887700  T
Q  423 cggaatcaaccttgtcgtgactcacgctatagctattgctattgctgttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgag 522  Q
    ||||||||||||||| |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887699 cggaatcaaccttgttgtgactcacgctatagctattgcta------ttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgag 37887606  T
Q  523 aaattttgctgcttcgatctccgatagggagagcttaaccggtctcttcttgttcctgcccttttccatgannnnnnnngagaggaaatgtcttgatcaa 622  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  37887605 aaattttgctgcttcgatctccgatagggagagcttaaccggcctcttcttgttcctgcccttttccatgatttttttttagaggaaatgtcttgatcaa 37887506  T
Q  623 gaa-ttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttcttattatttcgatagattat 718  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887505 gaatttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttcttattatttcgatagattat 37887409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University