View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13635_high_13 (Length: 223)

Name: NF13635_high_13
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13635_high_13
NF13635_high_13
[»] chr4 (9 HSPs)
chr4 (9-203)||(36419340-36419534)
chr4 (31-205)||(36376286-36376460)
chr4 (31-205)||(36435784-36435958)
chr4 (29-205)||(36429331-36429507)
chr4 (31-205)||(36370514-36370688)
chr4 (29-205)||(36407176-36407352)
chr4 (31-205)||(36399719-36399893)
chr4 (29-191)||(36412313-36412475)
chr4 (31-205)||(36389528-36389705)
[»] chr2 (1 HSPs)
chr2 (82-200)||(2662470-2662588)
[»] chr8 (4 HSPs)
chr8 (100-170)||(15697353-15697423)
chr8 (83-172)||(15799843-15799932)
chr8 (100-172)||(15805392-15805464)
chr8 (83-170)||(15703715-15703802)
[»] scaffold0090 (1 HSPs)
scaffold0090 (34-125)||(8230-8321)
[»] chr1 (1 HSPs)
chr1 (88-125)||(47607375-47607412)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 36419534 - 36419340
Alignment:
Q  9 tggagtagcataggggcatcacacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatcc 108  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36419534 tggagtatcataagggcatcacacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccataccaaaatcc 36419435  T
Q  109 gagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataa 203  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36419434 gagattttgggattcattacagcatcaaggagaacgttgctggcttttagatctctatggattattttcagccttgaatcttgatgaagatataa 36419340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 36376460 - 36376286
Alignment:
Q  31 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgcag 130  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36376460 acatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36376361  T
Q  131 catcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  36376360 catcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaa 36376286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 36435958 - 36435784
Alignment:
Q  31 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgcag 130  Q
    ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36435958 acatactatgttccaaccactctttttgttcttgcttgtatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgcag 36435859  T
Q  131 catcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  36435858 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaa 36435784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 36429507 - 36429331
Alignment:
Q  29 acacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgc 128  Q
    |||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  36429507 acacctactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgc 36429408  T
Q  129 agcatcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  36429407 agcatcgaggagaacgttgctggcttttagatctctatgaattattttcagccttgaatcttgatgaagatataaaa 36429331  T

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Target: chr4; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 36370688 - 36370514
Alignment:
Q  31 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgcag 130  Q
    |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||    
T  36370688 acatactatgttccgaccactctttttgttcttgcttgaatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcatttcag 36370589  T
Q  131 catcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  36370588 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaa 36370514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 36407352 - 36407176
Alignment:
Q  29 acacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgc 128  Q
    |||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  36407352 acacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgc 36407253  T
Q  129 agcatcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    ||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  36407252 agcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaa 36407176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 36399893 - 36399719
Alignment:
Q  31 acatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgcag 130  Q
    |||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||    
T  36399893 acatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccgaaatctgagattttgggattcatttcag 36399794  T
Q  131 catcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  36399793 catcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttggtgaagatataaaa 36399719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 36412475 - 36412313
Alignment:
Q  29 acacatactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcattgc 128  Q
    |||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  36412475 acacatactatgttccgaccactctttttgttcttgcttggatttcatcttctccaaatattctagccataccaaaatctgagattttgggattcattgc 36412376  T
Q  129 agcatcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttg 191  Q
    ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  36412375 agcgtcaaggagaacattgctggcttttagatctctatgaattattttcagccttgaatcttg 36412313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 36389705 - 36389528
Alignment:
Q  31 acatactatgttccaacaactctttttgttctagcttgaatttcatcttc---tccaaatattctagccatgccaaaatccgagattttgggattcattg 127  Q
    ||||||||||||||||| |||||||||||| | ||||| |||||||| ||   |||||||||||||||||| |||||||| |||||||| || |||||||    
T  36389705 acatactatgttccaaccactctttttgttattgcttggatttcatcatcgtctccaaatattctagccataccaaaatctgagattttagggttcattg 36389606  T
Q  128 cagcatcaaggagaacgttgctggcttttagatctctatggattatttttagccttgaatcttgatgaagatataaaa 205  Q
    |||| ||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||    
T  36389605 cagcgtcaaggagaacattgctggcttttaggtctctatgaatgattttcagccttgaatcttgatgaagatataaaa 36389528  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 2662470 - 2662588
Alignment:
Q  82 ccaaatattctagccatgccaaaatccgagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggattatttttagcc 181  Q
    ||||| ||||| ||||| ||||| || || ||||| ||||||||| |  |||| |  ||||| ||||| ||||||||||||||||| |||||| |||| |    
T  2662470 ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc 2662569  T
Q  182 ttgaatcttgatgaagata 200  Q
    ||||||||  |||||||||    
T  2662570 ttgaatctctatgaagata 2662588  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 15697353 - 15697423
Alignment:
Q  100 ccaaaatccgagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggat 170  Q
    |||||||| || ||||| ||||||||| || |||| || ||||| ||||||||||| ||||||||||||||    
T  15697353 ccaaaatctgatattttcggattcatttcatcatccagaagaacattgctggctttcagatctctatggat 15697423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 15799843 - 15799932
Alignment:
Q  83 caaatattctagccatgccaaaatccgagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggatta 172  Q
    ||||| |||| ||||  |||||||| || ||||| ||||||||| || |||| || ||||| ||||||||||| |||||||| |||||||    
T  15799843 caaatgttcttgccaatccaaaatctgatatttttggattcatttcatcatccagaagaacattgctggctttcagatctctgtggatta 15799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 15805392 - 15805464
Alignment:
Q  100 ccaaaatccgagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggatta 172  Q
    |||||||| || ||||| ||||||||| || |||| || ||||| ||||||||||| |||||||| |||||||    
T  15805392 ccaaaatctgatatttttggattcatttcatcatctagaagaacattgctggctttcagatctctgtggatta 15805464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 15703715 - 15703802
Alignment:
Q  83 caaatattctagccatgccaaaatccgagattttgggattcattgcagcatcaaggagaacgttgctggcttttagatctctatggat 170  Q
    ||||| |||| ||||  |||||||| || ||||| ||||||||| || |||| || |||||||||| |||||| || |||||||||||    
T  15703715 caaattttcttgccaatccaaaatctgatatttttggattcatttcatcatctagaagaacgttgcaggctttaaggtctctatggat 15703802  T

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Target: scaffold0090 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 8230 - 8321
Alignment:
Q  34 tactatgttccaacaactctttttgttctagcttgaatttcatcttctccaaatattctagccatgccaaaatccgagattttgggattcat 125  Q
    |||||||| ||||| | ||| ||||||||  | | ||||| |||  ||||| | |||||||||||||||||||| || ||||||||||||||    
T  8230 tactatgtgccaacgattctgtttgttctcccctcaatttgatcacctccacacattctagccatgccaaaatctgaaattttgggattcat 8321  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 47607412 - 47607375
Alignment:
Q  88 attctagccatgccaaaatccgagattttgggattcat 125  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  47607412 attctagccatgccaaaatctgagattttaggattcat 47607375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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