View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13635_high_5 (Length: 423)

Name: NF13635_high_5
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13635_high_5
NF13635_high_5
[»] chr2 (2 HSPs)
chr2 (133-407)||(17443608-17443882)
chr2 (274-318)||(5529938-5529982)
[»] chr6 (11 HSPs)
chr6 (154-327)||(9164530-9164714)
chr6 (3-136)||(33385099-33385236)
chr6 (3-92)||(33259414-33259503)
chr6 (3-93)||(9165013-9165104)
chr6 (3-93)||(33415983-33416074)
chr6 (166-327)||(33259236-33259407)
chr6 (1-93)||(33294454-33294547)
chr6 (214-290)||(33384838-33384914)
chr6 (27-93)||(9127732-9127799)
chr6 (284-327)||(24633053-24633096)
chr6 (15-56)||(24632210-24632251)
[»] scaffold0428 (2 HSPs)
scaffold0428 (166-327)||(3357-3527)
scaffold0428 (3-92)||(3534-3624)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 133 - 407
Target Start/End: Original strand, 17443608 - 17443882
Alignment:
Q  133 tgttgcttcattatcgagttatcttaatgtcaagttggttgttttgtttaaaaacatcaacaatgtaggatcggacttcactttttatgtatgttaccaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  17443608 tgttgcttcattatcgagttatcttaatgtcaagttggttgttttgtttaaaaacatcaacaatgtaggatcagacttcactttttatgtatgttacaaa 17443707  T
Q  233 aagtctacctcaacattctacaaggtacattaaatcttcagttcatcaaggttacatcatagcgactcttacaatatctaatccatcaaaattaatacaa 332  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17443708 aagtctacctcaccattctaaaaggtacattaaatcttcagttcatcaaggttacatcatagcgactgttacaatatctaatccatcaaaattaatacaa 17443807  T
Q  333 tagnnnnnnnnnnnnatctaaaactgtgaccttgttgtcaatcgaaagtccaatcgtggtactgatctgtgaaac 407  Q
    |||            |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  17443808 tagttttttgtttttatctaaaactgtgaccttcttgtcaatcgaaagtccaatcgtggtactgatctgggaaac 17443882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 5529938 - 5529982
Alignment:
Q  274 ttcatcaaggttacatcatagcgactcttacaatatctaatccat 318  Q
    ||||||||| | |||||||||||||| ||||||||||||||||||    
T  5529938 ttcatcaagataacatcatagcgactgttacaatatctaatccat 5529982  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 154 - 327
Target Start/End: Complemental strand, 9164714 - 9164530
Alignment:
Q  154 tcttaatgtcaagttggttgttttgtttaaaaacatcaacaatgtaggatcggacttcactttttatgtatgttaccaaaagtctacctcaacattctac 253  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||||||||||  |||||| |||| |||||||||||||||||| || || | |||| ||     
T  9164714 tcttcatgacaagttggttgttttgtttaaaaacgtcaacaatgtaggatcaaacttcatttttcatgtatgttaccaaaagtttagctgaccattttaa 9164615  T
Q  254 aaggtacattaaatcttcagttcatcaaggtta-----------catcatagcgactcttacaatatctaatccatcaaaattaa 327  Q
    ||||||| ||| || ||||||||||||||||||           ||||||||||||| |||||||||||||||||||||||||||    
T  9164614 aaggtacgttacatattcagttcatcaaggttacatctaagttacatcatagcgactgttacaatatctaatccatcaaaattaa 9164530  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 33385236 - 33385099
Alignment:
Q  3 atcaaagcacaggagctcctgaggaaaaaaggctta----gcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggatggttcttaaaact 98  Q
    |||||||||||||||||||| ||| |||| ||||||    | | ||||||||||||||| ||||| |||| || ||||||||||||||||||||| || |    
T  33385236 atcaaagcacaggagctccttagggaaaagggcttaattagagtgtgcagacaagaaagcatccaaagcagctgccgaaggaaggatggttcttacaagt 33385137  T
Q  99 tcggaaggaaggataggttctatgaattcccacttgtt 136  Q
    ||  |||||||||||||||||||||||||| |||||||    
T  33385136 tccaaaggaaggataggttctatgaattcctacttgtt 33385099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 33259503 - 33259414
Alignment:
Q  3 atcaaagcacaggagctcctgaggaaaaaaggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggatggttctt 92  Q
    |||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||    
T  33259503 atcaaatcacaggaactccttaggaaaataggcttagcgagtgcagacaagaaagcatccagagcaactgccgaaggaaggatcgttctt 33259414  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 9165104 - 9165013
Alignment:
Q  3 atcaaagcacaggagctcctgaggaaaaaaggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggat-ggttctta 93  Q
    |||||||||||  ||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||| ||||||||    
T  9165104 atcaaagcacaaaagctccttaggaaaaaaggcttagcgagtgcaaacaagaaagcatccagagcaactgccgaaggaaggataggttctta 9165013  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 33416074 - 33415983
Alignment:
Q  3 atcaaagcacaggagctcctgaggaaaaaaggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggat-ggttctta 93  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||| ||||||||    
T  33416074 atcaaagcacaagagctccttagaaaaaaaggcttagcgagtgcagacaagaaagcaaccagagcaactgccgaaggaaggataggttctta 33415983  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 33259407 - 33259236
Alignment:
Q  166 gttggttgttttgtttaaaaacatcaacaatgtaggatcggacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaa 265  Q
    ||||||| |||||||||||| | ||||||||||||||||  |||||| |||| ||||||||| ||||||||||| |  | |||| || ||||||||||      
T  33259407 gttggttcttttgtttaaaa-cgtcaacaatgtaggatcatacttcatttttaatgtatgttcccaaaagtctagccaaccattttaaaaggtacatttc 33259309  T
Q  266 atcttcagttcatcaaggttac-----------atcatagcgactcttacaatatctaatccatcaaaattaa 327  Q
    ||||||| ||||||||||||||           |||||||| ||| |||||||||||||||||||||||||||    
T  33259308 atcttcaattcatcaaggttacatctaagctaaatcatagcaactgttacaatatctaatccatcaaaattaa 33259236  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 33294547 - 33294454
Alignment:
Q  1 tcatcaaagcacaggagctcctgaggaaaaaaggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggat-ggttctta 93  Q
    |||||||||||||  |||| || ||||||||||||||||||||||||||  |||||| | ||| ||| ||| ||||||||||||| ||||||||    
T  33294547 tcatcaaagcacataagcttcttaggaaaaaaggcttagcgagtgcagaatagaaagcagccagagctactgccgaaggaaggataggttctta 33294454  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 33384914 - 33384838
Alignment:
Q  214 tttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaaatcttcagttcatcaaggttacatc 290  Q
    |||||||||||||||||||| ||||| || | |||| || ||||||||||| ||||||| |||||||||||| ||||    
T  33384914 tttttatgtatgttaccaaatgtctagctgaccattttaaaaggtacattacatcttcaattcatcaaggtttcatc 33384838  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 9127732 - 9127799
Alignment:
Q  27 aaaaaaggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggat-ggttctta 93  Q
    |||||||||||  |||||||||||||||||  | ||| ||||||| ||||||||||||| ||||||||    
T  9127732 aaaaaaggcttcacgagtgcagacaagaaatcagccagagcaactgccgaaggaaggataggttctta 9127799  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 24633053 - 24633096
Alignment:
Q  284 ttacatcatagcgactcttacaatatctaatccatcaaaattaa 327  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||    
T  24633053 ttacatcatggcgactgttacaatatctaatccattaaaattaa 24633096  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Original strand, 24632210 - 24632251
Alignment:
Q  15 gagctcctgaggaaaaaaggcttagcgagtgcagacaagaaa 56  Q
    |||||||| |||||||||||||| || |||||||||||||||    
T  24632210 gagctccttaggaaaaaaggcttggcaagtgcagacaagaaa 24632251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 327
Target Start/End: Complemental strand, 3527 - 3357
Alignment:
Q  166 gttggttgttttgtttaaaaacatcaacaatgtaggatcggacttcactttttatgtatgttaccaaaagtctacctcaacattctacaaggtacattaa 265  Q
    ||||||| |||||||||||| | ||||||||||||||||  |||||| |||| ||||||||| ||||||||||| | || |||| || ||||||||||      
T  3527 gttggttcttttgtttaaaa-cgtcaacaatgtaggatcatacttcatttttaatgtatgttcccaaaagtctagc-caccattttaaaaggtacatttc 3430  T
Q  266 atcttcagttcatcaaggt-----------tacatcatagcgactcttacaatatctaatccatcaaaattaa 327  Q
    ||||||| |||||||||||           ||||||||||| ||| |||||||||||||||||||||||||||    
T  3429 atcttcaattcatcaaggttacatctaagctacatcatagcaactgttacaatatctaatccatcaaaattaa 3357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 3624 - 3534
Alignment:
Q  3 atcaaagcacaggagctcctgaggaaaaa-aggcttagcgagtgcagacaagaaagtatccatagcaactaccgaaggaaggatggttctt 92  Q
    |||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||    
T  3624 atcaaatcacaggaactccttaggaaaaataggcttagcgagtgcagacaagaaagcatccagagcaactgccgaaggaaggatcgttctt 3534  T

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