View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13635_low_1 (Length: 735)

Name: NF13635_low_1
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13635_low_1
NF13635_low_1
[»] chr4 (1 HSPs)
chr4 (23-718)||(37887409-37888097)


Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 23 - 718
Target Start/End: Complemental strand, 37888097 - 37887409
Alignment:
Q  23 tataaaattaacaaaagatgcaaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37888097 tataaaattaacaaaagatgcaaagatttgatcaaatttcaattgggttctaatcacatctaaatcttcacattatttaaccaaaacaaatatatgcagt 37887998  T
Q  123 ataggaaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887997 ataggaaagtgaaatattaatatatacataatccacacatcaaaagttacaaacattgaaattagtaactaatctattaaaacacgattcagcaaagaac 37887898  T
Q  223 annnnnnnnnnnnnnnnnngttaagacatcattcatcagttatcactttcttctcttgatcatcctggctttaacaggaggcaagggagatgtagctcta 322  Q
    |                  ||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37887897 a--atatatacatatatatgttaagatatcattcatcggttatcattttcttctcttgatcatcctggctttaacaggaggcaaaggagatgtagctcta 37887800  T
Q  323 tataactcatcaatattaacgtaacgataccttttatttgttcttgcaacgcaactttcagaatctgacaaaacagtagatgatgatacagcatcaccac 422  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37887799 tataactcatcaatattaacgtaacgatacctcttatttgttcttgcaaagcaactttcagaatctgacaaaacagtagatgatgatacaacatcaccac 37887700  T
Q  423 cggaatcaaccttgtcgtgactcacgctatagctattgctattgctgttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgag 522  Q
    ||||||||||||||| |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887699 cggaatcaaccttgttgtgactcacgctatagctattgcta------ttgttattgctgttttgatcttcttcgaaatctccgctgctgagttgtacgag 37887606  T
Q  523 aaattttgctgcttcgatctccgatagggagagcttaaccggtctcttcttgttcctgcccttttccatgannnnnnnngagaggaaatgtcttgatcaa 622  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  37887605 aaattttgctgcttcgatctccgatagggagagcttaaccggcctcttcttgttcctgcccttttccatgatttttttttagaggaaatgtcttgatcaa 37887506  T
Q  623 gaa-ttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttcttattatttcgatagattat 718  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37887505 gaatttatgtaagatattttactttttcatttatatatacttaaggtaggtcggttatactatggatatttgttttcttattatttcgatagattat 37887409  T

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