View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13635_low_12 (Length: 243)
Name: NF13635_low_12
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 574219 - 574012
Alignment:
| Q |
18 |
taaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatacttttgaagc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
574219 |
taaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatgcttttgaagc |
574120 |
T |
|
| Q |
118 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttat-aagatgcctagtaacagtagtagca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
574119 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataaagatgcctagtaacagtagtagca |
574020 |
T |
|
| Q |
217 |
aagagaca |
224 |
Q |
| |
|
|||||||| |
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|
| T |
574019 |
aagagaca |
574012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 47683501 - 47683539
Alignment:
| Q |
151 |
tcacatgcttgcaatatagtgagctaatgatggtggttt |
189 |
Q |
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|||||||||||| || ||||||||||||||||||||||| |
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| T |
47683501 |
tcacatgcttgcgatgtagtgagctaatgatggtggttt |
47683539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 2471916 - 2471711
Alignment:
| Q |
18 |
taaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatacttttgaagc |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
2471916 |
taaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagc |
2471818 |
T |
|
| Q |
118 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2471817 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
2471718 |
T |
|
| Q |
218 |
agagaca |
224 |
Q |
| |
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||||||| |
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|
| T |
2471717 |
agagaca |
2471711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 8980990 - 8981195
Alignment:
| Q |
18 |
taaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatacttttgaagc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
8980990 |
taaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagc |
8981088 |
T |
|
| Q |
118 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8981089 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
8981188 |
T |
|
| Q |
218 |
agagaca |
224 |
Q |
| |
|
||||||| |
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|
| T |
8981189 |
agagaca |
8981195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 27135115 - 27134910
Alignment:
| Q |
18 |
taaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatttcatttatacttttgaagc |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
27135115 |
taaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatttcatttatgcttttgaagc |
27135017 |
T |
|
| Q |
118 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27135016 |
tacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaacagtagtagcaa |
27134917 |
T |
|
| Q |
218 |
agagaca |
224 |
Q |
| |
|
||||||| |
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|
| T |
27134916 |
agagaca |
27134910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 11322437 - 11322347
Alignment:
| Q |
116 |
gctacatccaactggattaaactaacaatatatgatcacatgcttgcaatatagtgagctaatgatggtggtttataagatgcctagtaac |
206 |
Q |
| |
|
|||| ||| |||| ||||||||||| |||||||||| | ||||||||||| |||| |||| ||| ||||||||||||| || |||||||| |
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| T |
11322437 |
gctatatctaactagattaaactaataatatatgatgatatgcttgcaatgtagtatgctagtgacggtggtttataaggtgactagtaac |
11322347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 23268249 - 23268296
Alignment:
| Q |
69 |
atctttcatgacagcagaattgtaacaatttcatttatacttttgaag |
116 |
Q |
| |
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||||||||||||| || |||||||||||||||||| || ||||||||| |
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| T |
23268249 |
atctttcatgacaacataattgtaacaatttcattcatgcttttgaag |
23268296 |
T |
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