View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13635_low_2 (Length: 599)
Name: NF13635_low_2
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 5 - 583
Target Start/End: Complemental strand, 51405290 - 51404712
Alignment:
| Q |
5 |
gagatatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagat |
104 |
Q |
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| T |
51405290 |
gagaaatgaacttaacaacatggagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagat |
51405191 |
T |
|
| Q |
105 |
tacagcaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaac |
204 |
Q |
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| T |
51405190 |
tacaacaaccttaaaggaaacttcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaac |
51405091 |
T |
|
| Q |
205 |
acgagctcattcattacatgaaatgaatgtcctaatgactccatcgttccatcgatacgctggtgtttatggaatggaaggagtattatcgaggcacgct |
304 |
Q |
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| T |
51405090 |
acaagctcattcattacatgaaatgaatgtcctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatcgaggcacgct |
51404991 |
T |
|
| Q |
305 |
tttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttg |
404 |
Q |
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| T |
51404990 |
tttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttg |
51404891 |
T |
|
| Q |
405 |
gaaagcgataaccatttgatcttcatcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctt |
504 |
Q |
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| T |
51404890 |
gaaagcgataaccatttgatcttcatcattttgttttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctt |
51404791 |
T |
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| Q |
505 |
tctgagagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctcgggatgattctacaaggt |
583 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51404790 |
tctgagagttccatcaagtgcattgcatagatacagagtcttcctcgctttcgggttcctcgggatgattctacaaggt |
51404712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 577
Target Start/End: Original strand, 29981430 - 29981983
Alignment:
| Q |
27 |
gagtaaaattcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaact |
126 |
Q |
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|||| ||||||| ||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| |||| |||| || | ||||| |
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| T |
29981430 |
gagtgaaattccaggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaaca |
29981529 |
T |
|
| Q |
127 |
tcacttgcttgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaa |
226 |
Q |
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| T |
29981530 |
tcactagcatggacttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaa |
29981629 |
T |
|
| Q |
227 |
atgaatgtcctaatgactccatcgttccatcgatacgctggtgtttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaat |
326 |
Q |
| |
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| || || |||||||| ||||| |||||||| | || |||||||| || || ||||| || || |||| | |||||||| || ||||| | |||||| |
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| T |
29981630 |
acgagtgccctaatgattccatagttccatcaactcgttggtgtttgtgaaacggaagtagaatcatcgcaactcgcttttggtgtgcacttgaacaaat |
29981729 |
T |
|
| Q |
327 |
atcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatct |
426 |
Q |
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|||||||| ||||| |||||| ||||| |||||||| ||||||||||||||| | || | |||||| | ||| || || || |||||||| ||| |
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| T |
29981730 |
gtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtct |
29981829 |
T |
|
| Q |
427 |
---tcatcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagt |
523 |
Q |
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| |||| ||| |||||||||||||| |||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||| |
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| T |
29981830 |
ttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagt |
29981929 |
T |
|
| Q |
524 |
gcattgcatagatacagagtcttcctcgctttcgggttcctcgggatgattcta |
577 |
Q |
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|||||||||| ||||| | ||||||||||||| ||||||| |||||||||| |
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| T |
29981930 |
gcattgcatatatacataactttcctcgctttcgtgttcctcttgatgattcta |
29981983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 352 - 539
Target Start/End: Complemental strand, 8156274 - 8156085
Alignment:
| Q |
352 |
gaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcat---cattttgctttttgttcc |
448 |
Q |
| |
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||||| |||||||| ||||||||||||||||| | || | |||||| | ||| || || || |||||||| |||| | ||| ||| |||||||||| |
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| T |
8156274 |
gaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttcc |
8156175 |
T |
|
| Q |
449 |
aaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagataca |
539 |
Q |
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| T |
8156174 |
aaa-gggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatataca |
8156085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 430 - 577
Target Start/End: Original strand, 36613530 - 36613677
Alignment:
| Q |
430 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
529 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||||||||| |
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| T |
36613530 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattg |
36613629 |
T |
|
| Q |
530 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattcta |
577 |
Q |
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| T |
36613630 |
catatatacacaactttcctcgctttcgtgttcctcttgatgattcta |
36613677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 430 - 577
Target Start/End: Complemental strand, 7674915 - 7674768
Alignment:
| Q |
430 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
529 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||||| || | ||| || |||||||| | || ||||||| ||||||| |||||||||| |||||||||| |
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| T |
7674915 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattg |
7674816 |
T |
|
| Q |
530 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattcta |
577 |
Q |
| |
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| T |
7674815 |
catatatacacaactttcctcgctttcgtgttcctcttgatgattcta |
7674768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 577
Target Start/End: Original strand, 25523753 - 25523900
Alignment:
| Q |
430 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
529 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||| | || | ||| || |||||||| | || ||||||| ||||||||||||||| || |||||||||| |
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| T |
25523753 |
tcatgttgttttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattg |
25523852 |
T |
|
| Q |
530 |
catagatacagagtcttcctcgctttcgggttcctcgggatgattcta |
577 |
Q |
| |
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|||| ||||| | ||||| ||||||| ||||||| |||||||||| |
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| T |
25523853 |
catatatacacaactttccttgctttcgtgttcctcttgatgattcta |
25523900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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