View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13635_low_3 (Length: 457)
Name: NF13635_low_3
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 34849 - 35287
Alignment:
| Q |
13 |
agagatgaaggaaggaatagcgaatatgcnnnnnnnagcgaagagaagtgtggtgagatgaagaggcataaatgttgttcatctcctttactcaggnnnn |
112 |
Q |
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| T |
34849 |
agaggtgaaggaaggaatagcgaatatgcgggggggagagaagagaagtgtggtgagatgaagaggcataaatgttgttcatctcctttactcgggtttt |
34948 |
T |
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| Q |
113 |
nnnncttctaattaataatcttgtctaaaaagaaaagaagaaatctttgttttgatcccaatcacataaacaattaaaggtagatttgattggattggat |
212 |
Q |
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| T |
34949 |
tttt-ttctaattaataatcttgtctaaaaagaaaagaagaaatctttgttttgatcccaatcacataaacaattaaaggtagatttgatt-----ggat |
35042 |
T |
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| Q |
213 |
gcatttgcagagaaacaatgcatgcgtgctgtcgactatttcttagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaat |
312 |
Q |
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| T |
35043 |
gcatttgcagagaaacaatgcatgcgtgctgtcgactatttcttagatccatctagccaagggggaggaggaggagcggttatccttcaaattgattaat |
35142 |
T |
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| Q |
313 |
gttgatgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaa |
412 |
Q |
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| T |
35143 |
gttgttgttgttattattattatagatagagagatataatggagaatgtagtagtaaagaaaaaagcatctttatctaatgttggagcatgggggatgaa |
35242 |
T |
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| Q |
413 |
cattgtcagctccgttggaattatcatcgccaacaaacaactcat |
457 |
Q |
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| T |
35243 |
cattgtcagctccgttggaattatcatcgctaacaaacaactcat |
35287 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 8677533 - 8677488
Alignment:
| Q |
394 |
ttggagcatgggggatgaacattgtcagctccgttggaattatcat |
439 |
Q |
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| T |
8677533 |
ttggagcatggggtatgaacgttgtgagttccgttggaattatcat |
8677488 |
T |
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