View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13635_low_6 (Length: 419)
Name: NF13635_low_6
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 32 - 400
Target Start/End: Original strand, 55074844 - 55075212
Alignment:
| Q |
32 |
agggtggacacacacatgtttttgttggatattggatacttactaattgaatcaaccttcaatgacattattaattgcatggttaaactgacatctatat |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55074844 |
agggtggacacacacatgtttttgttggatattggatacttactaattgaatcaaccttcaatgacattattaattgcatggttaaactgacatctatat |
55074943 |
T |
|
| Q |
132 |
caaaatattttctgcatatttaaattcaatttcacatgtaatgtaaggattatacattaatagtagttttcatttgtgcaggtatagttgtgttgacgta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55074944 |
caaaatattttctgcatatttaaattcaatttcacatgtaatgtaaggattatacattaacagtagttttcatttgtgcaggtatagttgtgttgacgta |
55075043 |
T |
|
| Q |
232 |
atatttctctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagattgcttggtggaagagat |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55075044 |
atatttctctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagattgcttggtggaagagat |
55075143 |
T |
|
| Q |
332 |
ggaaaaggccaccaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaac |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55075144 |
ggaaaaggccaacaaatttttctgtttttcaacccaagggataatctttaaagttgattgtgacttaac |
55075212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 315
Target Start/End: Complemental strand, 50371493 - 50371418
Alignment:
| Q |
240 |
ctatttctatatggggaactagttaagtggatgtcaccttccttgcatagactcttcatgttctgcgaatgagatt |
315 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
50371493 |
ctatttctatgtgaggaactagttaagtggatgtcaccttccttgcatagactcttcatgatctacgaatgagatt |
50371418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University