View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13635_low_7 (Length: 419)
Name: NF13635_low_7
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 36715188 - 36714787
Alignment:
| Q |
1 |
caatttttcatacagaaacggttgatcaaataatagatagtattactatttactagtaaaagcaaaagtgcaagtttattgtacctttcagaaccatctt |
100 |
Q |
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| T |
36715188 |
caatttttcaaacagaaatggttgatcaaataatagatagtattactatttactattaaaagcaaaagtacaagtttattgtacctttcagaaccatctt |
36715089 |
T |
|
| Q |
101 |
cagtgtcccttaaaatagaaggaggagccatggttgagagaaatgggatgcttctgcattgaaaacccatgtcaagcatatggcttatataatcatgtaa |
200 |
Q |
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| T |
36715088 |
cagtgtcccttaaaatagaaggaggagccatggttgagagaaatgggatccttctgcattgaaaacccatgtcaagcatatggcttatataatcatgtaa |
36714989 |
T |
|
| Q |
201 |
aatattatataattttgagacatcattatagaaatttgtgctgtgtataatataatactcaaaagaacagtaatgaaaatctttatttaattcttttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
36714988 |
aatattatataattttgagacatcattatagaaatttgtgctgtgtataataaaatactcaaaagaacagtaatgaaagtctttatttaattcttttaaa |
36714889 |
T |
|
| Q |
301 |
agtttcatcattatattaagtctttagttaattattttaaaacaaatttgtttgatttgacatagtcacgtgtccgatttgacagaatcaagatgaacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36714888 |
agtttcatcattatattaagtctttagttaattattttaaaacaaatttgtttgatttgacatagtcacgtgtccgatttgacagaatcacgatgaacca |
36714789 |
T |
|
| Q |
401 |
tt |
402 |
Q |
| |
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|| |
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| T |
36714788 |
tt |
36714787 |
T |
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