View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13635_low_9 (Length: 286)
Name: NF13635_low_9
Description: NF13635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13635_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 51039734 - 51039606
Alignment:
| Q |
145 |
agtattgtatctgaaacataaatcaatggacctcttgtcctggattctagacggagtagcttcaattatcatatctcaagctgaaatttcatgcatgctt |
244 |
Q |
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| T |
51039734 |
agtattgtatctgaaacataaatcaatggacctcttgtcctggattctagacggagtagcttcaattatcatatctcaagctgaaatttcatgcatactt |
51039635 |
T |
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| Q |
245 |
gaaatgtttttcacactttcaagatgatg |
273 |
Q |
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| T |
51039634 |
gaaatgtttttcacactttcaatatgatg |
51039606 |
T |
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Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 573501 - 573619
Alignment:
| Q |
9 |
acatcatcaattatcattctctcccctccatctcactcacctccatgagcaacaacttcactgtcccaaattctacttcttcccttgtttgtacttttca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
573501 |
acatcatcaattatcattctctcccctccatctcactcacctccatgagcaacaactcaactgtcccaaattctacttcttcccttgtttgtacttttca |
573600 |
T |
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| Q |
109 |
ttgttaatttaatttcttt |
127 |
Q |
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| T |
573601 |
ttgttaatttaatttcttt |
573619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 49244685 - 49244803
Alignment:
| Q |
9 |
acatcatcaattatcattctctcccctccatctcactcacctccatgagcaacaacttcactgtcccaaattctacttcttcccttgtttgtacttttca |
108 |
Q |
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| T |
49244685 |
acatcatcaattatcattccctcccctccatcccactcacctccatgagcaacaactccacggtcccaaattctatttcttcccttgtttgtacttttca |
49244784 |
T |
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| Q |
109 |
ttgttaatttaatttcttt |
127 |
Q |
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||||||||||||||||||| |
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| T |
49244785 |
ttgttaatttaatttcttt |
49244803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 14488053 - 14488177
Alignment:
| Q |
10 |
catcatcaattatcattctctcccctccatctcactcacctccatgagcaacaac------ttcactgtcccaaattctacttcttcccttgtttgtac- |
102 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| || || |||| |||||| ||||||||||||||||||| |
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| T |
14488053 |
catcatcaattatcattctctctcctccatcccactcacctccatgagcaacaacataggattgacattcccgaattctccttcttcccttgtttgtact |
14488152 |
T |
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| Q |
103 |
ttttcattgttaatttaatttcttt |
127 |
Q |
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||||||||||||||||||||||||| |
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| T |
14488153 |
ttttcattgttaatttaatttcttt |
14488177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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