View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_high_11 (Length: 314)
Name: NF13636_high_11
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 26831779 - 26831471
Alignment:
| Q |
1 |
taacgatgtgtgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831779 |
taacgatgtgtgattttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaac |
26831680 |
T |
|
| Q |
101 |
aagaagttggatcttcctcttacgccttctttggcttcaacggtaaaatccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26831679 |
aagaagttggatcttcctcttacgccttctttggcttcaacggtaaaacccctaatctaatctcatcgcatggctaaaacagtttcatccattttccttc |
26831580 |
T |
|
| Q |
201 |
taaattgtgattatagtcatagttatggttacgtacactgcaagctttgatactacaataatacaaacaaatgtggctgatatgcggccacaattatagc |
300 |
Q |
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| T |
26831579 |
tgaattgtgattatagtcatagttatggttacatacgctgcaagctttgatactacgataatacaaacaaatgtggctgatatgcggccacaattatagc |
26831480 |
T |
|
| Q |
301 |
gatgatgtc |
309 |
Q |
| |
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||||||| |
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| T |
26831479 |
tgtgatgtc |
26831471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 26818016 - 26817885
Alignment:
| Q |
14 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
113 |
Q |
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||||| ||||||||| |||||||||| | |||||||| ||||| ||||||||| | ||||||||| |||||||||||| || ||||||||||| ||||| |
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| T |
26818016 |
ttttctctttgttttcagtgaatgcgaacgaatgtttgatgacgaggatgcaacaaatgtcactcgattatcattttaaggtagaacaagaagtgggatc |
26817917 |
T |
|
| Q |
114 |
ttcctcttacgccttctttggcttcaacggta |
145 |
Q |
| |
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|||| |||||||||||||||||||||| |||| |
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| T |
26817916 |
ttccgcttacgccttctttggcttcaatggta |
26817885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 26785120 - 26784994
Alignment:
| Q |
20 |
ctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctc |
119 |
Q |
| |
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||||||||||||| |||||| |||||||||| ||||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| || ||||| | |
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| T |
26785120 |
ctttgtttttagtaaatgcgaatgaatgtttgatgacgaggatgcaaaagatgtcacttgattatcattttacggttgaacaagaagtggggtcttctac |
26785021 |
T |
|
| Q |
120 |
ttacgccttctttggcttcaacggtaa |
146 |
Q |
| |
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||| ||||||||||||||||| ||||| |
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| T |
26785020 |
ttatgccttctttggcttcaatggtaa |
26784994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 26791329 - 26791197
Alignment:
| Q |
14 |
ttttccctttgtttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatc |
113 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||| ||||||||| | |||||||| |||| ||||||| || ||||||||||| || || |
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| T |
26791329 |
ttttccctatgtttttagtgaatgcaaatgaatgtttaatgacgaggatgcaacaaatgtcacttgattaccattttaaggtggaacaagaagtagggtc |
26791230 |
T |
|
| Q |
114 |
ttcctcttacgccttctttggcttcaacggtaa |
146 |
Q |
| |
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|||| |||| ||||||||||||||||| ||||| |
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| T |
26791229 |
ttccacttatgccttctttggcttcaatggtaa |
26791197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 41546623 - 41546664
Alignment:
| Q |
34 |
aatgcggatgaatgtttaatgacaaggatgcaagagatgtca |
75 |
Q |
| |
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||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
41546623 |
aatgctgatgaatgcttaatgacaagaatgcaagagatgtca |
41546664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 41919467 - 41919589
Alignment:
| Q |
25 |
tttttagtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacg |
124 |
Q |
| |
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|||| ||||||| ||||||||||| | ||||| || ||||||||||||||||| |||| |||||||| || ||||||||||| || |||||| |||| | |
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| T |
41919467 |
ttttcagtgaattcggatgaatgtatgatgactagaatgcaagagatgtcactagattaccattttactgtggaacaagaagtggggtcttccacttatg |
41919566 |
T |
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| Q |
125 |
ccttctttggcttcaacggtaaa |
147 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
41919567 |
ccttctttggcttcaacggtaaa |
41919589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 20237408 - 20237292
Alignment:
| Q |
30 |
agtgaatgcggatgaatgtttaatgacaaggatgcaagagatgtcactcaattatcattttacagttgaacaagaagttggatcttcctcttacgccttc |
129 |
Q |
| |
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||||||||| |||||||||| ||||||| |||||||||||||| | |||| ||||| |||||||| |||||||||||||| | || | || ||| |
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| T |
20237408 |
agtgaatgcaaatgaatgtttgttgacaagaatgcaagagatgtctttggattaccatttcacagttgagcaagaagttggatcagctactcatgctttc |
20237309 |
T |
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| Q |
130 |
tttggcttcaacggtaa |
146 |
Q |
| |
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||||||||||| ||||| |
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| T |
20237308 |
tttggcttcaatggtaa |
20237292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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