View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_high_18 (Length: 242)
Name: NF13636_high_18
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5064518 - 5064744
Alignment:
| Q |
1 |
aaaatatacaatggttgtgggaaatacgtactatactcgacatatttgttcnnnnnnngtttaacatgctgcagaaggattgttgaaaggattgtagaaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5064518 |
aaaaaatacaatggttgtgggaaatacgtactatactcgacatatttgttctttttttgtttaacatgctgcagaaggattgttgaaaggattgtagaaa |
5064617 |
T |
|
| Q |
101 |
tgagtatttggagccatagtgaaggcagtgatcttattggaaccaccaccaccgtcggcgacgcggccgagtctttcgcaagacgggcagatggagaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5064618 |
tgagtatttggagccatagtgaaggcagtgatcttattggaaccaccaccaccgtcggcgacgcggccgagtctttcgcaagacgggcagatggagaggg |
5064717 |
T |
|
| Q |
201 |
tggctgcaggcataggcatgtacaaag |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5064718 |
tggctgcaggcataggcatgtacaaag |
5064744 |
T |
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