View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13636_high_3 (Length: 455)

Name: NF13636_high_3
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13636_high_3
NF13636_high_3
[»] chr7 (2 HSPs)
chr7 (198-437)||(19807628-19807867)
chr7 (83-202)||(19807471-19807590)
[»] chr2 (30 HSPs)
chr2 (198-437)||(39137678-39137917)
chr2 (19-142)||(44614515-44614638)
chr2 (83-202)||(39137521-39137640)
chr2 (83-202)||(39487735-39487854)
chr2 (320-412)||(39414815-39414907)
chr2 (83-193)||(39458954-39459064)
chr2 (298-389)||(39397905-39397996)
chr2 (111-391)||(39473463-39473743)
chr2 (277-415)||(39459127-39459265)
chr2 (322-415)||(39215552-39215645)
chr2 (280-416)||(39222763-39222899)
chr2 (351-415)||(39421862-39421926)
chr2 (279-379)||(39152461-39152561)
chr2 (83-155)||(39152307-39152379)
chr2 (301-416)||(39192469-39192584)
chr2 (301-416)||(39198149-39198264)
chr2 (290-384)||(39369996-39370090)
chr2 (111-202)||(39415067-39415158)
chr2 (67-142)||(44623751-44623826)
chr2 (111-193)||(39369838-39369920)
chr2 (306-415)||(39468243-39468352)
chr2 (19-80)||(44623661-44623722)
chr2 (150-202)||(39215380-39215432)
chr2 (258-302)||(44895624-44895668)
chr2 (248-303)||(39152472-39152527)
chr2 (214-302)||(39397950-39398038)
chr2 (111-202)||(39422033-39422124)
chr2 (248-302)||(39222773-39222827)
chr2 (353-415)||(39381541-39381603)
chr2 (248-302)||(39459140-39459194)
[»] chr6 (1 HSPs)
chr6 (300-415)||(16113197-16113312)
[»] chr8 (3 HSPs)
chr8 (67-142)||(40347398-40347473)
chr8 (18-80)||(44951351-44951413)
chr8 (27-80)||(40347316-40347369)
[»] chr5 (1 HSPs)
chr5 (76-193)||(17059441-17059558)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 198 - 437
Target Start/End: Original strand, 19807628 - 19807867
Alignment:
Q  198 tcaaaggatgaggggttcgaaggtcgagttaaggagttcaaatnnnnnnngaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaac 297  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807628 tcaaaggatgaggggttcgaaggtcgagttaaggagttcaaataaaaaaagaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaac 19807727  T
Q  298 ttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaa 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807728 ttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaa 19807827  T
Q  398 agagctcaagttaaaagaaggaaaaatcaaggatcctggt 437  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19807828 agagctcaagttaaaagaaggaaaaatcaaggatcctggt 19807867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 19807471 - 19807590
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 182  Q
    |||||||||||||| || ||||||  | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807471 tgaatttgaaggccgggcgaaggagctcgaatctgaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 19807570  T
Q  183 atgaaggagttccagtcaaa 202  Q
    ||||||||||||||||||||    
T  19807571 atgaaggagttccagtcaaa 19807590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 198 - 437
Target Start/End: Original strand, 39137678 - 39137917
Alignment:
Q  198 tcaaaggatgaggggttcgaaggtcgagttaaggagttcaaatnnnnnnngaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaac 297  Q
    ||||||||||||| |||||||| || |||||||||| ||||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39137678 tcaaaggatgaggagttcgaagatcaagttaaggagctcaaatcaaaaaagaagcaattcgaaaaccaagttgaggatttcaaatcaaaagagaagcaac 39137777  T
Q  298 ttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaa 397  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39137778 ttgaaagccaagtcgaggattacaaatcaaaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaa 39137877  T
Q  398 agagctcaagttaaaagaaggaaaaatcaaggatcctggt 437  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  39137878 agagctcaagttaaaagaaggacagatcaaggatcctggt 39137917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 44614515 - 44614638
Alignment:
Q  19 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44614515 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaagggtgaatttgaaggcctggtggaggactttgaatcaga 44614614  T
Q  119 aaagaagcatttcgagagccgaca 142  Q
    ||||||||||||||||||||||||    
T  44614615 aaagaagcatttcgagagccgaca 44614638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 83 - 202
Target Start/End: Original strand, 39137521 - 39137640
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 182  Q
    |||||||||||||  |||||||||  | ||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  39137521 tgaatttgaaggcagggtgaaggaactcgaatctgaaaagaagcattttgagagccgacagaagcagcttgaaacacaagaaaagcaatatgaagaacaa 39137620  T
Q  183 atgaaggagttccagtcaaa 202  Q
    ||||||||||||||||||||    
T  39137621 atgaaggagttccagtcaaa 39137640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 202
Target Start/End: Complemental strand, 39487854 - 39487735
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 182  Q
    |||||||||||||| |||||||||    ||||| |||||||||||||  |||||||||||||||  ||||||| |||||||||||||| |||||||||||    
T  39487854 tgaatttgaaggccgggtgaaggagcccgaatctgaaaagaagcattctgagagccgacagaaggagctcgaagcacaagaaaagcaacatgaagaacaa 39487755  T
Q  183 atgaaggagttccagtcaaa 202  Q
    ||||||||||||||||||||    
T  39487754 atgaaggagttccagtcaaa 39487735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 39414907 - 39414815
Alignment:
Q  320 caaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaa 412  Q
    ||||||||||||||| ||| |||||||| | |||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||||||    
T  39414907 caaatcaaaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaa 39414815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 39458954 - 39459064
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaa 182  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||||||||| | | ||||  ||||||| || |||||||||||| ||||| ||||    
T  39458954 tgaatttgaaggccgggtgaaggagttggaatcagaaaagaagcatttcgagagcaggctgaaggagctcgaatcaaaagaaaagcaatttgaaggacaa 39459053  T
Q  183 atgaaggagtt 193  Q
     ||||||||||    
T  39459054 gtgaaggagtt 39459064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 39397996 - 39397905
Alignment:
Q  298 ttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagta 389  Q
    ||||||||||||| ||||| | |||||||||||| || |||||||||||| |||||||| |||| ||||||||||||||| |||||||||||    
T  39397996 ttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaagaacggtggaaaaaacttgagtcaaaagagaatcagttcaaagta 39397905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 111 - 391
Target Start/End: Complemental strand, 39473743 - 39473463
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaaggatgagg 210  Q
    |||||||||||||||||||||||||||| || ||||  ||||||| || |||||||| ||| | | | |||| ||||||||||||||||||| || ||||    
T  39473743 gaatcagaaaagaagcatttcgagagccaactgaaggagctcgaatcaaaagaaaagaaatttaatggacaagtgaaggagttccagtcaaaagaggagg 39473644  T
Q  211 ggttcgaaggtcgagttaaggagttcaaatnnnnnnngaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaaagccaagt 310  Q
      ||  |  ||| ||| |||||||| |||        | || ||||| ||   |  ||| ||||  | |||| |||| |||||||| || ||| | | ||    
T  39473643 aatttaacagtcaagtgaaggagtttaaaacgaagaaggaggaattcaaaggtcgggttaaggagcttaaataaaaaaagaagcaatttaaaaccaaggt 39473544  T
Q  311 cgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtact 391  Q
     ||||||| |||||||| || ||| ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  39473543 tgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcgagtcaaaagagaataagttcaaagtact 39473463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 277 - 415
Target Start/End: Original strand, 39459127 - 39459265
Alignment:
Q  277 tcaaatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaa 376  Q
    |||| |||||| |||||||| ||||||||||  | ||||| | ||||| ||||||||| ||| ||||||||  | |||||||| ||||  |  |||||||    
T  39459127 tcaattcaaaaaagaagcaatttgaaagccagtttgaggacttcaaattaaaagagaagcaatttgaagaacagcggaaagaattcgatgctgaagagaa 39459226  T
Q  377 taagttcaaagtactggtcaaagagctcaagttaaaaga 415  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  39459227 taagttcaaagtactagtgaaagagctcaagttaaaaga 39459265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 322 - 415
Target Start/End: Original strand, 39215552 - 39215645
Alignment:
Q  322 aatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 415  Q
    ||||||||||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39215552 aatcaaaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 39215645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 416
Target Start/End: Original strand, 39222763 - 39222899
Alignment:
Q  280 aatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataa 379  Q
    |||||||| |||||||  | ||||||||||||||||| |  |||||||||||||| ||| |||||||| | |||||  |||| |||||| ||||||||||    
T  39222763 aatcaaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataa 39222862  T
Q  380 gttcaaagtactggtcaaagagctcaagttaaaagaa 416  Q
    |||||||| |  ||| || |||||||| || ||||||    
T  39222863 gttcaaagcaaaggtgaaggagctcaacttcaaagaa 39222899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 39421926 - 39421862
Alignment:
Q  351 tggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 415  Q
    |||||||||||| |||||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  39421926 tggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaaga 39421862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 39152461 - 39152561
Alignment:
Q  279 aaatcaaaagagaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaata 378  Q
    ||||||||| ||||| || |||||| ||| || ||||| | |||| |||||||||| ||| ||||| || |||||||||| |||||||||||||||||||    
T  39152461 aaatcaaaaaagaagaaatttgaaatccaggttgaggacttcaaaacaaaagagaagcaatttgaaaaacggtggaaagagctcgagtcaaaagagaata 39152560  T
Q  379 a 379  Q
    |    
T  39152561 a 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 39152307 - 39152379
Alignment:
Q  83 tgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaa 155  Q
    |||||||||||||| ||||||| |  | ||||||||||||||||||||||||||||||| ||||  |||||||    
T  39152307 tgaatttgaaggccaggtgaagaagctggaatcagaaaagaagcatttcgagagccgactgaaggagctcgaa 39152379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 416
Target Start/End: Complemental strand, 39192584 - 39192469
Alignment:
Q  301 aaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaaga 400  Q
    |||| ||||| ||||| | ||||||||||||||| ||| | |||| | | ||||  ||||| ||||||||||||||||||||||||| |  ||| || ||    
T  39192584 aaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaagga 39192485  T
Q  401 gctcaagttaaaagaa 416  Q
    |||||| |||||||||    
T  39192484 gctcaacttaaaagaa 39192469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 416
Target Start/End: Complemental strand, 39198264 - 39198149
Alignment:
Q  301 aaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaaga 400  Q
    |||| ||||| ||||| | ||||||||||||||| ||| | |||| | | ||||  ||||| ||||||||||||||||||||||||| |  ||| || ||    
T  39198264 aaagtcaagtggaggagttcaaatcaaaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaagga 39198165  T
Q  401 gctcaagttaaaagaa 416  Q
    |||||| |||||||||    
T  39198164 gctcaacttaaaagaa 39198149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 39369996 - 39370090
Alignment:
Q  290 gaagcaacttgaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttca 384  Q
    ||||||| |||||| |||||||||| | | |||||| ||||| || ||| |||||| | ||||||||||||| |||| ||||||||| |||||||    
T  39369996 gaagcaatttgaaacccaagtcgagcacttcaaatcgaaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttca 39370090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 39415158 - 39415067
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaa 202  Q
    ||||||||||||||||||||||| |||| || ||||  ||| ||| || ||||||| ||||   |||||| |||||| ||||||||||||||    
T  39415158 gaatcagaaaagaagcatttcgaaagccaactgaaggagcttgaatcaaaagaaaatcaattcaaagaacgaatgaaagagttccagtcaaa 39415067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 44623751 - 44623826
Alignment:
Q  67 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgaca 142  Q
    |||| ||| ||||||||||||| ||||||||  ||| |||||||||||||||||| | | |||||||||| |||||    
T  44623751 ttgaatctaaaaagggtgaattggaaggcctattgagggactttgaatcagaaaaaacgaatttcgagagacgaca 44623826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 193
Target Start/End: Original strand, 39369838 - 39369920
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagtt 193  Q
    ||||| |||||||||||| |||||||| ||| | ||  ||||||| || |||||||||||| ||||| ||||| |||||||||    
T  39369838 gaatcggaaaagaagcatatcgagagcagactgcaggagctcgaatcaaaagaaaagcaatttgaaggacaaaagaaggagtt 39369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 415
Target Start/End: Original strand, 39468243 - 39468352
Alignment:
Q  306 caagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctca 405  Q
    ||||| ||||| | |||||||||||| || ||| |||| ||| |||| |||||| |  ||||||||||||||  ||||||||||  ||| || ||| |||    
T  39468243 caagttgaggatttcaaatcaaaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttca 39468342  T
Q  406 agttaaaaga 415  Q
    ||||||||||    
T  39468343 agttaaaaga 39468352  T

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Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 44623661 - 44623722
Alignment:
Q  19 agaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaag 80  Q
    |||| |||||| ||||||||||||||| ||||||| | ||||||||| ||||| ||||||||    
T  44623661 agaagtgctgcgaagagctagaaaatatggagacccaagttaaggaatttgagactgaaaag 44623722  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 39215380 - 39215432
Alignment:
Q  150 ctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaa 202  Q
    ||||||||  ||||||||||||  |||||||||| ||||||||||||||||||    
T  39215380 ctcgaaaccaaagaaaagcaattcgaagaacaaaagaaggagttccagtcaaa 39215432  T

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Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 44895668 - 44895624
Alignment:
Q  258 gaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaa 302  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||    
T  44895668 gaaagccaagttgaggccttcaaatcaaaagagaagcagcttgaa 44895624  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 39152472 - 39152527
Alignment:
Q  248 gaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaaa 303  Q
    |||| |||| |||| ||| ||||||||||||||| |||||||||||||| ||||||    
T  39152472 gaagaaatttgaaatccaggttgaggacttcaaaacaaaagagaagcaatttgaaa 39152527  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 39398038 - 39397950
Alignment:
Q  214 tcgaaggtcgagttaaggagttcaaatnnnnnnngaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaa 302  Q
    |||||||||||||||||||| || |||        ||||| || |||| |||||||||||| |||||||||||||| |||||| |||||    
T  39398038 tcgaaggtcgagttaaggagctcgaattacaaaataagcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaa 39397950  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 39422124 - 39422033
Alignment:
Q  111 gaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatgaagaacaaatgaaggagttccagtcaaa 202  Q
    |||||||||||||||||||| || ||||||| ||||   |||||| ||  ||||||| |||  || | ||||||||||||||||| ||||||    
T  39422124 gaatcagaaaagaagcattttgaaagccgactgaaggatctcgaatcaatagaaaagaaattcgatggacaaatgaaggagttcctgtcaaa 39422033  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 39222773 - 39222827
Alignment:
Q  248 gaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaa 302  Q
    |||||| ||||||| |||||| ||||| || |||||||||||||||||| |||||    
T  39222773 gaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaa 39222827  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 39381603 - 39381541
Alignment:
Q  353 gaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 415  Q
    |||||||| ||| |||||||||||| |||||||||||  | | || |||||||||||||||||    
T  39381603 gaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaaga 39381541  T

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Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 39459140 - 39459194
Alignment:
Q  248 gaagcaattcgaaaaccaagttgaggacttcaaatcaaaagagaagcaacttgaa 302  Q
    ||||||||| |||| |||  ||||||||||||||| ||||||||||||| |||||    
T  39459140 gaagcaatttgaaagccagtttgaggacttcaaattaaaagagaagcaatttgaa 39459194  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 16113197 - 16113312
Alignment:
Q  300 gaaagccaagtcgaggaatacaaatcaaaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaag 399  Q
    ||||||||||| ||| | | ||||||||| || || ||| |||||||| |||||||||||||||| |||||||||||| |||||||||||  ||  || |    
T  16113197 gaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaagg 16113296  T
Q  400 agctcaagttaaaaga 415  Q
    ||||||||||||||||    
T  16113297 agctcaagttaaaaga 16113312  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 40347398 - 40347473
Alignment:
Q  67 ttgagtctgaaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgaca 142  Q
    |||| ||| ||||||||||||||||| | ||| ||||||||||||||||||||||   | ||||||||||||||||    
T  40347398 ttgaatctaaaaagggtgaatttgaatggctgatgaaggactttgaatcagaaaaattgaatttcgagagccgaca 40347473  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 44951413 - 44951351
Alignment:
Q  18 aagaaatgctgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaag 80  Q
    ||||| |||||| ||||||| ||||||||||||||| | ||||| |||||||||||| |||||    
T  44951413 aagaagtgctgcgaagagcttgaaaataaggagacccaagttaatgaacttgagtctaaaaag 44951351  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 40347316 - 40347369
Alignment:
Q  27 tgcaaagagctagaaaataaggagaccgaggttaaggaacttgagtctgaaaag 80  Q
    ||||||||||||||||||| ||||||| | |||||| ||||||| |||||||||    
T  40347316 tgcaaagagctagaaaatatggagacccaagttaagaaacttgaatctgaaaag 40347369  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 17059441 - 17059558
Alignment:
Q  76 aaaagggtgaatttgaaggcctggtgaaggactttgaatcagaaaagaagcatttcgagagccgacagaagcggctcgaaacacaagaaaagcaatatga 175  Q
    |||||||||||||||||||||  ||  ||||||||  ||||||||| | | |||| |||| ||||| ||||  |||||||||| ||||||| || |  ||    
T  17059441 aaaagggtgaatttgaaggccgagtcgaggactttacatcagaaaaaatggattttgagatccgactgaaggagctcgaaacaaaagaaaaacatttcga 17059540  T
Q  176 agaacaaatgaaggagtt 193  Q
    |||| || ||||||||||    
T  17059541 agaaaaagtgaaggagtt 17059558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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