View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13636_high_4 (Length: 439)
Name: NF13636_high_4
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_high_4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 34774833 - 34774458
Alignment:
| Q |
20 |
atggggtggtgggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774833 |
atggggtggtgggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggat |
34774734 |
T |
|
| Q |
120 |
taaggcttatttggcatactacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcaaattacataggtgggcgagattgtggatga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774733 |
taaggcttatttggcatactacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcaaattacataggtgggcgagattgtggatga |
34774634 |
T |
|
| Q |
220 |
gataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaatttttattgcga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774633 |
gataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaatttttattgcga |
34774534 |
T |
|
| Q |
320 |
ctggtttaaggtggcctgctgattttaattgtgttggagaggggtggtcagtttggtccctggtgttttctgcagg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34774533 |
ctggtttaaggtggcctgctgattttaattgtgttggagaggggtggtcagtttggtccctggtgttttctgcagg |
34774458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 35 - 439
Target Start/End: Complemental strand, 35024697 - 35024297
Alignment:
| Q |
35 |
aggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35024697 |
aggatgatgttaattccccctaacttcttcatcctttgggagtgttggttcggaggggagaggaataagagaactcgtaacgaattaaggcttatttggc |
35024598 |
T |
|
| Q |
135 |
atactacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcaaattacataggtgggcgagattgtggatgagataaaggtgttatc |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35024597 |
atattacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcaaattacggaggtgggcgagattgtggatgagataaaggtgttatc |
35024498 |
T |
|
| Q |
235 |
gtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaatttttattgcgactggtttaaggtggc |
334 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
35024497 |
gtggcgttggtctttggatcgtatccttatgtcgccgtgtttgtactatgaatgatgttggaatccaaaggaatctctattgcgactggtttaaggcaac |
35024398 |
T |
|
| Q |
335 |
ctgctgattttaattgtgttggagaggggtggtcagtttggtccctggtgttttctgcaggnnnnnnnncttctggttttttcgcctactggctgtttcg |
434 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
35024397 |
ctgctggttttaattatgttggagaggggtggtcagtttggtccctggtgttttctgcaggttttt----ttctggttttttcgcctactggctgttttg |
35024302 |
T |
|
| Q |
435 |
gttct |
439 |
Q |
| |
|
||||| |
|
|
| T |
35024301 |
gttct |
35024297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 12825603 - 12825478
Alignment:
| Q |
44 |
ttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacga |
143 |
Q |
| |
|
|||||||| ||||| || ||| | ||||||||||||||||| || || |||||||||||| ||| ||||| || ||||| |||||| ||||| |||||| |
|
|
| T |
12825603 |
ttaattccgcctaatttattcgttctttgggagtgttggtgtggtggagagaggaataagcgaatccgtaatggtttaagacttattcggcattctacga |
12825504 |
T |
|
| Q |
144 |
tttgggtgttatggaaagctaggaat |
169 |
Q |
| |
|
|| ||| || |||||||| |||||| |
|
|
| T |
12825503 |
gtttggttttgtggaaagcaaggaat |
12825478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 42749019 - 42748646
Alignment:
| Q |
20 |
atggggtggtgggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42749019 |
atggggtggtgggagaggatgatgttaattccccctaacttcttcattctttgggagtgttggagcggaggggagaggaataagagaactcgtagcggat |
42748920 |
T |
|
| Q |
120 |
taaggcttatttggcatactacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcaaattacataggtgggcgagattgtggatga |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
42748919 |
taaggcttatttggcataccacgatttgggtgttatggaaagctaggaataatcgagtatttaataatcgaattacggaggtgggcgagattgtggatga |
42748820 |
T |
|
| Q |
220 |
gataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaatttttattgcga |
319 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
42748819 |
gataaaggtgatatcgtggcgttggtctttggatcgtattcttatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaatgtcttttgcga |
42748720 |
T |
|
| Q |
320 |
ctggtttaaggtggcctgctgattttaattgtgttggagaggggtggtcagtttggtccctggtgttttctgcagg |
395 |
Q |
| |
|
| ||||||| |||||| | |||| ||||| |||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
42748719 |
aggatttaaggaagcctgcaggtttt--ttgtgctggagaggggtggtcaatttggtccctgctgttttctgcagg |
42748646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 47820122 - 47820220
Alignment:
| Q |
71 |
tgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaat |
169 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | |||| || ||||| | ||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
47820122 |
tgggagtgttggtgcggtggggagaggaagaagagtattcgtcgggggttaagattaatttggcatgcgacgatttgggttttatggaaagctaggaat |
47820220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 37631661 - 37631565
Alignment:
| Q |
206 |
gagattgtggatgagataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaa |
302 |
Q |
| |
|
||||||||||| ||||| |||||| | ||||||||||||| |||| | | | ||||| ||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
37631661 |
gagattgtggaagagattaaggtgctgtcgtggcgttggtttttgtctaggcttcatatttcgccgtgtttattctatgaatggacttggaatccaa |
37631565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 300
Target Start/End: Original strand, 25355704 - 25355732
Alignment:
| Q |
272 |
tgtttgtactatgaatggtgttggaatcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25355704 |
tgtttgtactatgaatggtgttggaatcc |
25355732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 37035417 - 37035562
Alignment:
| Q |
20 |
atggggtggtgggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggat |
119 |
Q |
| |
|
|||||||||||||||||| | || ||||||| ||||| || || || | |||||||||||| | || |||||||||| |||| | | |||| | || | |
|
|
| T |
37035417 |
atggggtggtgggagaggtttattgtaattccgcctaatttatttgtcttatgggagtgttggagtggcggggagaggattaagcgtattcgtcaggggt |
37035516 |
T |
|
| Q |
120 |
taaggcttatttggcatactacgatttgggtgttatggaaagctag |
165 |
Q |
| |
|
|||| | ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
37035517 |
taagattaatttggcatgttacgatttgggttttatggaaagctag |
37035562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 24189411 - 24189566
Alignment:
| Q |
30 |
gggagaggatgatgttaattccccctaacttcttcatcctttgggagtgttggtgcggaggggagaggaataagagaactcgtaacggattaaggcttat |
129 |
Q |
| |
|
|||||||||| | ||||||| |||||||| ||| ||||||||||||||| | || || ||| ||||||||||| |||||| || |||| ||||| |
|
|
| T |
24189411 |
gggagaggattctcttaattctgcctaacttgttcgctctttgggagtgttggagtggtggcgagcagaataagagaattcgtaagggcctaagacttat |
24189510 |
T |
|
| Q |
130 |
ttggcatactacgatttgggtgttatggaaagctaggaataatcgagtatttaata |
185 |
Q |
| |
|
||||||| | ||| | |||||||| |||| || ||||||||| |||| ||||||| |
|
|
| T |
24189511 |
ttggcatgcaacggtgtgggtgttgtggattgcgaggaataatagagtgtttaata |
24189566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 24189580 - 24189697
Alignment:
| Q |
211 |
tgtggatgagataaaggtgttatcgtggcgttggtctttggatcgtatccatatatcgccgtgtttgtactatgaatggtgttggaatccaaaggaattt |
310 |
Q |
| |
|
||||||||| || ||||| || |||||||| |||||||||||| | ||| ||| | |||||| |||||||||||||||| ||| |||| ||||| | |
|
|
| T |
24189580 |
tgtggatgacatcaaggtcttgtcgtggcgatggtctttggatagaatctctatgcctccgtgtatgtactatgaatggtgctggtgcccaagggaatgt |
24189679 |
T |
|
| Q |
311 |
ttattgcgactggtttaa |
328 |
Q |
| |
|
| ||||| ||||||||| |
|
|
| T |
24189680 |
cttttgcgtctggtttaa |
24189697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 38553102 - 38553143
Alignment:
| Q |
128 |
atttggcatactacgatttgggtgttatggaaagctaggaat |
169 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
38553102 |
atttggcacactacgatttgggtgttgtggaaagctaggaat |
38553143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 21016781 - 21016729
Alignment:
| Q |
116 |
ggattaaggcttatttggcatactacgatttgggtgttatggaaagctaggaa |
168 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
21016781 |
ggattgaggcttatttggcatacaacgatttgggtgttgcggaaggctaggaa |
21016729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University