View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_high_9 (Length: 314)
Name: NF13636_high_9
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 55211 - 54908
Alignment:
| Q |
1 |
cgctactgtgctgaaatcttcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctt |
100 |
Q |
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| T |
55211 |
cgctactgtgctgaaatcttcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctt |
55112 |
T |
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| Q |
101 |
tacacacgttacattgcagggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggttgcacatatgatgcagttc |
200 |
Q |
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| T |
55111 |
tacacacgttacattgcagggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggttgcacatatgatgcagttc |
55012 |
T |
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| Q |
201 |
acaattaaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaagttagcaagtaacttgggtc |
300 |
Q |
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| T |
55011 |
acaattaaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaagttagcaagtaacttgggtt |
54912 |
T |
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| Q |
301 |
tgtg |
304 |
Q |
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| T |
54911 |
tgtg |
54908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 33754670 - 33754515
Alignment:
| Q |
20 |
tcttagctacctgaagctccctcaatttacttagtacagaagaatggaaaacatcttgaagcctagtgcattctaagtctttacacacgttacattgcag |
119 |
Q |
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| T |
33754670 |
tcttagctacatgaagctccctcaatttacttaacacagaagaatggagagcaccttgaagtccggtgcgctc--agtctttgcacacattacattgcag |
33754573 |
T |
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| Q |
120 |
ggttacatcagtactttattttcatgattttcagaaacactgaaattattaggcaatgtggt |
181 |
Q |
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| T |
33754572 |
ggttgcattagta----tttttcatgattttcagaaacacggaatttattaggtaatgtggt |
33754515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 33754468 - 33754378
Alignment:
| Q |
190 |
tgatgcagttcacaattaaaaagtatgatccaggcatatgtatgtccatagttcattcgtgatagcatcactttggtccttaggtcatcaa |
280 |
Q |
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| T |
33754468 |
tgatgcagttcacaattaaaaagtatgattcaggcatatgtatgttcatagttcatacctgatagcatgattttgattgttaggtcatcaa |
33754378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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