View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13636_low_1 (Length: 702)
Name: NF13636_low_1
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_1 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 326 - 686
Target Start/End: Complemental strand, 7418796 - 7418436
Alignment:
| Q |
326 |
acaccatgtggatgtagactcaagagtcaagagtcaaggtcaatgtaataaactactttgcaaattctaagtcaataaatcaatattgaaatttctgtga |
425 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418796 |
acactatgtgaatgtagactcaagagtcaagagtcaaggtcaatggaataaactactttgcaaattctaagtcaataaatcaatattgaaatttctgtga |
7418697 |
T |
|
| Q |
426 |
aattgcaatggcaacaatccaagaaacaaaaggcaatgagtcctttttagtttggcaactcgaaattatttttgaaagatcaaaatatacaggtcaattg |
525 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418696 |
aattgcaatggcaacaatccaagaaacaataggcagtgagtccattttagtttggcaactcgaaattatttttgaaagatcaaaatatacaggtcaattg |
7418597 |
T |
|
| Q |
526 |
tcttccacttactcttcaattattttaggtgggcccacttattcttgttttaacaaataaagttttatcgatttgccaggatcctgcttgcaaacggaca |
625 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418596 |
tcttccacttactcttcaattattttagatgggcccacttattcttgttttaacaaataaagttttatcgatttgccaggatcctgcttgcaaacggaca |
7418497 |
T |
|
| Q |
626 |
agatgaccttaaatttaatataagttactattgtaaaaataaggttgaatgggttagttat |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7418496 |
agatgaccttaaatttaatataagttactattgtaaaaataaggttgaatgggttagttat |
7418436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 32965960 - 32965917
Alignment:
| Q |
281 |
agtctcctacggtaggagacctattaagattgtctaccgtagcc |
324 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
32965960 |
agtctcctacggtaggagacctaatgagattgcctaccgtagcc |
32965917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 26034169 - 26034413
Alignment:
| Q |
17 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034169 |
tatgcttgctgggaatgtatgcagcttgcagagaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
26034268 |
T |
|
| Q |
117 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034269 |
attcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
26034368 |
T |
|
| Q |
216 |
aaaatcttctttctaaatctaatggttgacatcgattttgaaatt |
260 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
26034369 |
aaaaccttctttctaaatctaatggctggcatcgattttgaaatt |
26034413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 6090779 - 6090535
Alignment:
| Q |
17 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090779 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
6090680 |
T |
|
| Q |
117 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
215 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090679 |
attcattacaaattcaattgctttttaaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
6090580 |
T |
|
| Q |
216 |
aaaatcttctttctaaatctaatggttgacatcgattttgaaatt |
260 |
Q |
| |
|
|||| ||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
6090579 |
aaaaccttttttctaaatctaatggctggcatcgattttgaaatt |
6090535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 13882672 - 13882615
Alignment:
| Q |
183 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
13882672 |
gtgggtcaacctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
13882615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 14022797 - 14022740
Alignment:
| Q |
183 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
14022797 |
gtgggtcaacctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
14022740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 31400 - 31721
Alignment:
| Q |
13 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31400 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
31499 |
T |
|
| Q |
113 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
31500 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
31599 |
T |
|
| Q |
212 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaatt-nnnnnnnnnnnnnnnnttatagtctcctacggtaggagacctattaagat |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
31600 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaaaaaaaaagtaaaaattgtagtctcctacggtaggagacctattaaggt |
31699 |
T |
|
| Q |
311 |
tgtctaccgtagccaacaccat |
332 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
31700 |
tgcctaccgtagccaacaccat |
31721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 5133 - 4812
Alignment:
| Q |
13 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5133 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
5034 |
T |
|
| Q |
113 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
5033 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
4934 |
T |
|
| Q |
212 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaatt-nnnnnnnnnnnnnnnnttatagtctcctacggtaggagacctattaagat |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
4933 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaaaaaaaaagtaaaaattgtagtctcctacggtaggagacctattaaggt |
4834 |
T |
|
| Q |
311 |
tgtctaccgtagccaacaccat |
332 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
4833 |
tgcctaccgtagccaacaccat |
4812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 14834566 - 14834887
Alignment:
| Q |
13 |
aatatatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14834566 |
aatatatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
14834665 |
T |
|
| Q |
113 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||||||||||| | |
|
|
| T |
14834666 |
aaaaattcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtc |
14834765 |
T |
|
| Q |
212 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaatt-nnnnnnnnnnnnnnnnttatagtctcctacggtaggagacctattaagat |
310 |
Q |
| |
|
|||||||| |||||||||||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||||| | |
|
|
| T |
14834766 |
attcaaaaccttctttctaaatctaatggatggcatcgattttgaaattaaaaaaaaaagtaaaaattgtagtctcctacggtaggagacctattaaggt |
14834865 |
T |
|
| Q |
311 |
tgtctaccgtagccaacaccat |
332 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
14834866 |
tgcctaccgtagccaacaccat |
14834887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 52105984 - 52105762
Alignment:
| Q |
17 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52105984 |
tatgcttgctgg-aatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
52105886 |
T |
|
| Q |
117 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52105885 |
attcattacaaattcaattgcttttttaaagttcaaaattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatttatgccattc |
52105786 |
T |
|
| Q |
216 |
aaaatcttctttctaaatctaatg |
239 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
52105785 |
aaaaccttctttctaaatctaatg |
52105762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 52105720 - 52105669
Alignment:
| Q |
280 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacacca |
331 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
52105720 |
tagtctcctacggtaggagacccattaaagttgcctaccgtagtcaacacca |
52105669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 23568369 - 23568312
Alignment:
| Q |
183 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
|||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23568369 |
gtgggtcaatctgccaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
23568312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 48158449 - 48158694
Alignment:
| Q |
17 |
tatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48158449 |
tatgcttgctgggaatgtatgcagcttgcaggaaacacgcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
48158548 |
T |
|
| Q |
117 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcca-tt |
214 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| | || |
|
|
| T |
48158549 |
atttattacaaattcaattgtttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatatatgctattt |
48158648 |
T |
|
| Q |
215 |
caaaatcttctttctaaatctaatggttgacatcgattttgaaatt |
260 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
48158649 |
caaaaccttctttctaaatctaatggctggcatcgattttgaaatt |
48158694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 52865775 - 52865719
Alignment:
| Q |
184 |
tgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
||||||| |||| || |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
52865775 |
tgggtcaacctgccaagaaatctatgccattcaaaatgctctttctaaatccaatgg |
52865719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 1e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 41806965 - 41807213
Alignment:
| Q |
17 |
tatgcttgctgggaatgtatgcagcttgcagggaacac----acgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnn |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41806965 |
tatgcttgcggggaatgtatgcagcttgcagggaacacacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaa |
41807064 |
T |
|
| Q |
113 |
nnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgcc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||| | |
|
|
| T |
41807065 |
aaaaattcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtggatgggtcaagctgcaaacaaatctatgtc |
41807164 |
T |
|
| Q |
212 |
attcaaaatcttctttctaaatctaatggttgacatcgattttgaaatt |
260 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
41807165 |
attcaaaaccttctttctaattctaatggctcacatcgattttaaaatt |
41807213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 5950183 - 5950126
Alignment:
| Q |
183 |
gtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
5950183 |
gtgggtcaacctgcaaagaaatctgtgccattcaaaatgttctttctaaatccaatgg |
5950126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 41807236 - 41807286
Alignment:
| Q |
280 |
tagtctcctacggtaggagacctattaagattgtctaccgtagccaacacc |
330 |
Q |
| |
|
|||||| ||||| ||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
41807236 |
tagtcttctacgataggagacccattaaggttgcctaccgtagccaacacc |
41807286 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 32 - 330
Target Start/End: Original strand, 6231623 - 6231922
Alignment:
| Q |
32 |
tgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnnnttcattacaaattc |
131 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
6231623 |
tgtatgcatcttgtagggaacacacgaggatggtgggggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaaattcgttacaaattc |
6231722 |
T |
|
| Q |
132 |
aattgcttttttaaagttcaagattaatgttttaaatata-catcttagtgggtgggtcatgctgcaaacaaatctatgccattcaaaatcttctttcta |
230 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6231723 |
acttgcttttttaaagttcaagattaatgttttaaatatatcatccta----gtgggtcatgctgcaaacaaatctatgccattcaaaagcttctttcta |
6231818 |
T |
|
| Q |
231 |
aatc----taatggttgacatcgattttgaaattnnnnnnnnnnnnnnnnttatagtctcctacggtaggagacctattaagattgtctaccgtagccaa |
326 |
Q |
| |
|
|||| |||| |||| |||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
6231819 |
aatctaattaatagttggcatcgattttgaaattaaaataaaaataaaaattgtagtctcctacgataggagacccattaaggttgtctaccgtagccaa |
6231918 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 15517672 - 15517728
Alignment:
| Q |
184 |
tgggtcatgctgcaaacaaatctatgccattcaaaatcttctttctaaatctaatgg |
240 |
Q |
| |
|
||||||| |||| || |||||| ||||||||||||| ||||||||||||| ||||| |
|
|
| T |
15517672 |
tgggtcaacctgccaaaaaatctgtgccattcaaaatgttctttctaaatccaatgg |
15517728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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