View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_low_11 (Length: 314)
Name: NF13636_low_11
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 39213925 - 39214138
Alignment:
| Q |
1 |
agagttgaatgaacaaaagccatcaacaagagtggactatatcaattgctcagagtcatccgtgtgaggttcacgatgatggttggtcctcccaacctaa |
100 |
Q |
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| T |
39213925 |
agagttgaatgaacaaaagccatcaacaagagtggactatatcaattgctcagagtcatccgtgtgaggttcacgatgatggttggtcctcccaacctaa |
39214024 |
T |
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| Q |
101 |
tatctttctaataccgatattagatcatttgaaataagttcaaaaggaacttcattatacacctgtagctacaacaatgtgtcagctctctaattaaatt |
200 |
Q |
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| T |
39214025 |
tatctttctaataccgatattagatcatttgaaataagttcaaaaggaacttcattatacacctgtagctacaacaatgtgtcagctctctaattaaatt |
39214124 |
T |
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| Q |
201 |
ggatgtttcaaagt |
214 |
Q |
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|||||||||||||| |
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| T |
39214125 |
ggatgtttcaaagt |
39214138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 39214743 - 39214822
Alignment:
| Q |
214 |
tgagaaaaaagttcaaagttttataacaaacgagcaaaaaccgtgtcaattaaactataaagatggaaaattgaaagtag |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39214743 |
tgagaaaaaagttcaaagttttataacaaacgagcaaaaaccgtgtaaattaaactataaagatggaaaattgaaagtag |
39214822 |
T |
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