View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_low_14 (Length: 306)
Name: NF13636_low_14
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 5469326 - 5469041
Alignment:
| Q |
6 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatcttcatctgcaccatcttc |
105 |
Q |
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| T |
5469326 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactgttgtcatcttcatctgcaccatcttc |
5469227 |
T |
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| Q |
106 |
atgttttttgtcttgctctacatttcctggtgacaatgattagcaattagttggcaaaggatccccacaaagccctaggttgcctacatatgatagctca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5469226 |
atgttttttgtcttgctctacatttcctggtgacaatgatgagcaattagttggcaaaggatccccacaaagcccttggttgcctacatatgatagctca |
5469127 |
T |
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| Q |
206 |
ttgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatgga |
291 |
Q |
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| T |
5469126 |
ttgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatgga |
5469041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 5502903 - 5502615
Alignment:
| Q |
6 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatcttcatctgcaccatcttc |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | | |||||| |||| |||||||||| |
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| T |
5502903 |
agcttccacacacaatccagaagccagtaatatacccgacaactatgcttgtgtataatcccaatctttcattgtcgtcatcgctatctacaccatcttc |
5502804 |
T |
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| Q |
106 |
atgttttttgtcttgctctacatttcctggtgacaatgattagcaattagttggcaaaggatccccacaaagccctaggttgcctacata---tgatagc |
202 |
Q |
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||||||| |||||| |||| ||||||| |||||||||||| |||||| |||||||||||||| ||||||||||| |||||||| |||| |||| || |
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| T |
5502803 |
atgttttctgtctttctctccatttccaggtgacaatgatgagcaatcagttggcaaaggatgtccacaaagccccgggttgccttcataaattgatggc |
5502704 |
T |
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| Q |
203 |
tcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcatgga |
291 |
Q |
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|||||||||||| ||||||||||||| | ||||||||||| | ||||||||||| ||||||||||||| ||| | | |||||||||| |
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| T |
5502703 |
tcattgaaggtggcaaactgattagccatcggaatttgtcccaaaaggttgttgtatgacaagttcaaatgacttaggaatgtcatgga |
5502615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 5487086 - 5486821
Alignment:
| Q |
6 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatcttcatctgcaccatcttc |
105 |
Q |
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|
|||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||| | | |||||| |||| ||||||||| |
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| T |
5487086 |
agcttccacacacaatccagaaaccagttatatacccgatagctatgcttgcatacaatcccaatctttcattgtcatcatctccatcaacaccatcttt |
5486987 |
T |
|
| Q |
106 |
atgttttttgtcttgctctacatttcctggtgacaatgattagcaattagttggcaaaggatccccacaaagccctaggttgcctacatatgatagctca |
205 |
Q |
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||||||| ||||||| ||| ||||||| ||| ||| |||| |||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||| |
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| T |
5486986 |
atgttttctgtcttgttctccatttccaggtaacattgatgagcaattagtcggcaaaggatggccacaaagtcctgcattgcctacatatgatagctca |
5486887 |
T |
|
| Q |
206 |
ttgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaa |
271 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| ||||||||||| || ||||||||| |
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| T |
5486886 |
ttgaaggtgccaaattgattagccactggaatttgtccagaaaggttgttgtatgataagttcaaa |
5486821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 6 - 153
Target Start/End: Complemental strand, 5497859 - 5497712
Alignment:
| Q |
6 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatcttcatctgcaccatcttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||| | ||||||||| |||| |||||||||| |
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| T |
5497859 |
agcttccacacacaatccagaagccagtgatatacccaactgctatgcttgcatataatccccatctttcattgttgtcatctccatcaacaccatcttc |
5497760 |
T |
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| Q |
106 |
atgttttttgtcttgctctacatttcctggtgacaatgattagcaatt |
153 |
Q |
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|||||| | ||||| ||| ||| ||| |||||||||||| ||||||| |
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| T |
5497759 |
atgtttcctttcttgttctccatgtccaggtgacaatgatgagcaatt |
5497712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 6 - 271
Target Start/End: Complemental strand, 5492089 - 5491821
Alignment:
| Q |
6 |
agcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatctt---catctgcaccatc |
102 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||| ||| ||| |
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| T |
5492089 |
agcttccacacacaatccagaagccggtaatatacccgactgctatgcttgcatataatccaaatctttcagccttgtcatcatccccatcttcactatc |
5491990 |
T |
|
| Q |
103 |
ttcatgttttttgtcttgctctacatttcctggtgacaatgattagcaattagttggcaaaggatccccacaaagccctaggttgcctacatatgatagc |
202 |
Q |
| |
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|| ||||||| | ||||| ||| ||||||| || |||||||| ||||||| | | ||| |||| ||||| | | || ||||||||| ||| || | |
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| T |
5491989 |
ttgatgttttatttcttgttctccatttccaggcaacaatgatgagcaatttttctgtaaatgatctccacacaactctgggttgcctatata-aattga |
5491891 |
T |
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| Q |
203 |
t-cattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaa |
271 |
Q |
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| ||| ||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||||||||| |
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| T |
5491890 |
tgcatcaaaggttccaaactgattagctaacggaattcttccagagagattgttgtatgacaagttcaaa |
5491821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 5478981 - 5478792
Alignment:
| Q |
7 |
gcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcactattgtcatctt---catctgcaccatct |
103 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| |||||| | || ||||| | |||| |||||||| |
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| T |
5478981 |
gcttccacacacaatccaaaagccagtgatatacccgacatctatgcttgcatataaccccaacctttcagtcttttcatcgtccccatcatcaccatct |
5478882 |
T |
|
| Q |
104 |
tcatgttttttgtcttgctctacatttcctggtgacaatgattagcaattagttggcaaaggatccccacaaagccctaggttgcctacata |
195 |
Q |
| |
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| | |||| | |||| ||| ||||||| || |||||||| |||||||||||||| ||| | |||||||||||| |||||||| |||| |
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| T |
5478881 |
ttgtattttctttcttcttctccatttccatgtaacaatgatgagcaattagttggc--agggtacccacaaagccccgggttgccttcata |
5478792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 5478768 - 5478681
Alignment:
| Q |
201 |
gctcattgaaggtgccaaactgattagctgttggaatttgtccagagaggttgttgtaggacaagttcaaataactcaaggatgtcat |
288 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| | || || |||||||| ||||| ||||||| ||||||| ||||||| |
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| T |
5478768 |
gctcattgaaggtgccaaactgattagccatcggaatttgttctgaaagattgttgtatgacaaattcaaatgactcaagaatgtcat |
5478681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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