View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13636_low_2 (Length: 620)

Name: NF13636_low_2
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13636_low_2
NF13636_low_2
[»] chr1 (3 HSPs)
chr1 (170-610)||(26831756-26832197)
chr1 (18-128)||(26832206-26832316)
chr1 (244-296)||(10629409-10629461)
[»] chr6 (1 HSPs)
chr6 (247-284)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (237-285)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (237-285)||(14487597-14487645)
[»] chr4 (1 HSPs)
chr4 (237-285)||(42488745-42488793)
[»] chr3 (1 HSPs)
chr3 (242-286)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 170 - 610
Target Start/End: Complemental strand, 26832197 - 26831756
Alignment:
Q  170 gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggactt 269  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26832197 gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt 26832098  T
Q  270 ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac 369  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||    
T  26832097 ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacac 26831998  T
Q  370 -ttgaagaagagactaatctcctactaatacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta 468  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831997 attgaagaagagactaatctcctactattacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta 26831898  T
Q  469 ttagtaatgaacggattaattaatatttgtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag 568  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831897 ttagtaatgaactgattaattaatatttgtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag 26831798  T
Q  569 gttgttgaattaattaattaacgatgtgtgattttccctttg 610  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26831797 gttgttgaattaattaattaacgatgtgtgattttccctttg 26831756  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 26832316 - 26832206
Alignment:
Q  18 ggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtcatgagaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832316 ggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtcatgagaag 26832217  T
Q  118 tcatcgtcatg 128  Q
    |||||||||||    
T  26832216 tcatcgtcatg 26832206  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
Q  244 ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt 296  Q
    ||||||| |||||||||||||||| || || |||||||||||| |||||||||    
T  10629409 ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt 10629461  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
Q  247 gttgaggttcgaacctcggacttctcacttattcacct 284  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3218632 gttgaggttcgaacctcgaacttctcacttattcacct 3218669  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
Q  237 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 285  Q
    |||| |||||||||| |||||||||||||||  ||||||||||||||||    
T  24074542 atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt 24074590  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 14487597 - 14487645
Alignment:
Q  237 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 285  Q
    |||| ||||||||| |||||||||||||||  || ||||||||||||||    
T  14487597 atatgtaggggttggggttcgaacctcggatatcccacttattcacctt 14487645  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 42488745 - 42488793
Alignment:
Q  237 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 285  Q
    |||| ||||||||| ||||| ||||||||||  ||||||||||||||||    
T  42488745 atatgtaggggttggggttcaaacctcggacgcctcacttattcacctt 42488793  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 31435555 - 31435511
Alignment:
Q  242 taggggttgaggttcgaacctcggacttctcacttattcaccttt 286  Q
    ||||||||| |||||||||||||||| || |||||||||| ||||    
T  31435555 taggggttggggttcgaacctcggacatcccacttattcatcttt 31435511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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