View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_low_4 (Length: 453)
Name: NF13636_low_4
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Original strand, 31279461 - 31279882
Alignment:
| Q |
15 |
atcattgtaacattcttttaatttcttgtcaatcattcttaaaggattctgggggtattggtctattgccttattccagcaaatagcttctctaggaaat |
114 |
Q |
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| T |
31279461 |
atcattgtaacattcttttaatttcttgtcaatcattcttaaaggattctgggggtattggtctattgccttattccagcaaatagcttctctaggaaat |
31279560 |
T |
|
| Q |
115 |
aacattgctatccaaattgctgctggtagcagccttaaggttatgcattaaaccatattttatggaatatgatagaacaaatattatacatgttccattt |
214 |
Q |
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| T |
31279561 |
aacattgctatccaaattgctgctggtagcagccttaaggttatgcattaaaccatattttatggaatatgatagaacaaatattatacatgttccattt |
31279660 |
T |
|
| Q |
215 |
ttcttccttatagaaatgttttatttccacnnnnnnnacaggcagtttacaagcattatcatgcagatggaaaattgagcctacaacattttattgtttt |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31279661 |
ttcttccttatagaaatgttttatttccactttttttacaggcagtttacaagcattatcatgcagatggaaaattgagcctgcaacattttattgtttt |
31279760 |
T |
|
| Q |
315 |
ctttggaatctttgaactgttactttctcaacttcctgatatccactcattgagatgggttaatgcattgtgcacttttagcacgattggatttgctggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31279761 |
ctttggaatctttgaactgttactttctcaacttcctgatatccactcattgagatgggttaatgcattgtgcacttttagcacgattggatttgctggt |
31279860 |
T |
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| Q |
415 |
acaaccatcggtgttaccatat |
436 |
Q |
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|||||||||||||||||||||| |
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| T |
31279861 |
acaaccatcggtgttaccatat |
31279882 |
T |
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