View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_low_7 (Length: 358)
Name: NF13636_low_7
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 178 - 354
Target Start/End: Original strand, 31617177 - 31617353
Alignment:
| Q |
178 |
atgttgagaaatggaaagggttaatataaagagagnnnnnnntgagttatgttcatgtatgtgtacgtaatgtttaaggtttgtgtctctattgggtggc |
277 |
Q |
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| T |
31617177 |
atgttgagaaatggaaagggttaatataaagagagaaaaaaatgagttatgttcatgtatgtgtacgtaatgtttaaggtttgtgtttctattgggtggc |
31617276 |
T |
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| Q |
278 |
gttatttcttagaaggttgtaaaatatgagtggtttttgttttctttgaccatggaaaatttggaaccttgtattgt |
354 |
Q |
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| T |
31617277 |
gttatttcttagaaggttgtaaaatatcagtggtttttgttttctttgaccatggaaaatttggaaccttgtattgt |
31617353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 31617007 - 31617145
Alignment:
| Q |
7 |
gacatgaaagggtgtgttgagaaagtgaaattgttgaaaccattcaaagagttttgattaannnnnnnnnnnnnnnnnnnttcaaaactacttgttgatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
31617007 |
gacatgaaagggtgtgttgagaaagtgaaattgttgaaaccattcaaagagttttgatgattattattattattattattttcaaaactacttgttgatg |
31617106 |
T |
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| Q |
107 |
aagatgccataagaaagagaagagaaaagggtggtgaag |
145 |
Q |
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| T |
31617107 |
aagatgccataagaaagagaagagaaaagggtggtgaag |
31617145 |
T |
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