View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13636_low_9 (Length: 324)
Name: NF13636_low_9
Description: NF13636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13636_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 292
Target Start/End: Original strand, 39369911 - 39370153
Alignment:
| Q |
50 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
149 |
Q |
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| T |
39369911 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
39370010 |
T |
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| Q |
150 |
cctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattggaacccaaggt |
249 |
Q |
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| T |
39370011 |
cctccaatatttctcttgacatctaaggttggtggtataggattgacacttacaagagcagatcgtgttattgtagttgatcctgattggaacccaaggt |
39370110 |
T |
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| Q |
250 |
acatcttaaagtattccttttcctcgacattaaaataatattg |
292 |
Q |
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| T |
39370111 |
acatcttaaagtattccttttcctcgacattaaaataatattg |
39370153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 269
Target Start/End: Original strand, 39355900 - 39356145
Alignment:
| Q |
24 |
tgtgacagaaaaagatttgttgatgtaagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgat |
123 |
Q |
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| T |
39355900 |
tgtgacagaataaaaattgttgatgtaagtattttgcatattcagtaacggttttaaatcctccaattgtcatttttcctcgtctaactgttaatttgat |
39355999 |
T |
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| Q |
124 |
ttcaggatttccaagatgttgctggacctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgt |
223 |
Q |
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| T |
39356000 |
ttcaggattttcaagatggtgttggagctccaatatttctgctgacatctcaagttggtggtttaggactgacacttacaagagcagatcgtgtgattgt |
39356099 |
T |
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| Q |
224 |
agttgatcctgattggaacccaaggtacatcttaaagtattccttt |
269 |
Q |
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| T |
39356100 |
tgttgatcctgcttggaaccctaggtacttcttgaaatattccttt |
39356145 |
T |
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