View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13637_high_3 (Length: 462)
Name: NF13637_high_3
Description: NF13637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13637_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 6553658 - 6554093
Alignment:
| Q |
17 |
agttaactccaatggacccttcatagattttgataaatgtggtaagtcaacaaaagtgcaattgattatttcctgtctaagtgatttgtttttcgtttaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553658 |
agttaactccaatggacccttcatagattttgataaatgtggtaagtcaacaaaagtgcaattgattatttcctgtctaagtgatttgtttttcgtttaa |
6553757 |
T |
|
| Q |
117 |
ttcatatacatcgtcagtgcaaagnnnnnnnnataccatcaatcaatcataatggtcagagatcttgccttc---ttttttcagtttcaaattcctctgc |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6553758 |
ttcatatacatcgtcagtgcaaagttttttttataccatcaatcaatcataatggtcagagatcttgccttcttcttttttcagtttcaaattcctctgc |
6553857 |
T |
|
| Q |
214 |
taatataatctcaagcttcccacttcctgtccatcatgaacaatggagcaactcctatccgcctcctcgaacaatgtggccgaattcaccgtcatatttc |
313 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6553858 |
taatataagctcaagtttcccacttcctgtccatcatgaacaatggagcaactcctatccgcctcctcgaacaatatggccgaattcaccgtcatatttc |
6553957 |
T |
|
| Q |
314 |
aatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataaccactgttttaccaacaaataaccatcata |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6553958 |
gatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataaccactgttttaccaacaaataaccatcata |
6554057 |
T |
|
| Q |
414 |
ttcaatcacctcctttttgggacagaagatatacct |
449 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6554058 |
ttcaatcacctccattttgggacagaagatatacct |
6554093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 185 - 422
Target Start/End: Complemental strand, 49058714 - 49058477
Alignment:
| Q |
185 |
cttcttttttcagtttcaaattcctctgctaatataatctcaagcttcccacttcctgtccatcatgaacaatggagcaactcctatccgcctcctcgaa |
284 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| || ||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
49058714 |
cttcttttttcagtttcaaaatcctctagcaatggaagttcaagcttccctcttcctggccatcatggcaaatggagcaactcttatccgcctcctcgaa |
49058615 |
T |
|
| Q |
285 |
caatgtggccgaattcaccgtcatatttcaatgggatttatgcagcatctaccctgcaaagattgaaccaacttcctatgtcaccatcacatatgataac |
384 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49058614 |
gaatgtggccgaattcaccatcatatttgaatggaatttgtgcagcacctaccctacaaaaattgaaccaacttcctatgtcaccatcacatatgataag |
49058515 |
T |
|
| Q |
385 |
cactgttttaccaacaaataaccatcatattcaatcac |
422 |
Q |
| |
|
|||| |||||||| |||||| |||| ||||||||| |
|
|
| T |
49058514 |
tactgctttaccaattaataacaatcacgttcaatcac |
49058477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 49059047 - 49059002
Alignment:
| Q |
21 |
aactccaatggacccttcatagattttgataaatgtggtaagtcaa |
66 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
49059047 |
aactccaatggacccttcatggattttgatgaatgtggtatgtcaa |
49059002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University