View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13637_high_7 (Length: 239)
Name: NF13637_high_7
Description: NF13637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13637_high_7 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 41470426 - 41470206
Alignment:
| Q |
19 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaacagattaaattcgtcc |
118 |
Q |
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| T |
41470426 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgtcattctgtaaacaacaagatgaagaacagatttaattcgtcc |
41470327 |
T |
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| Q |
119 |
taagttattaaaataagagggattggtgtgcataatttgacacaaaagaccgaatggtccatagattaaggaatgctaacaatgttaaatggacttggat |
218 |
Q |
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| T |
41470326 |
taagttattaaaataagagggattggtgtgcataatttgacacaaaagaccgaatggtccatagattaaggaatgctaacaatgttaaatggacttggat |
41470227 |
T |
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| Q |
219 |
ctcatctcaaaagctagttca |
239 |
Q |
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| T |
41470226 |
ctcatctcaaaagctagttca |
41470206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 41477308 - 41477127
Alignment:
| Q |
19 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaacagattaaattcgtcc |
118 |
Q |
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| T |
41477308 |
tcttcagccaaagacatcattttttcatcagccttttgttgctcttctattgccatctcattctgtaaacaacaagatgaagaacagatttaatccatca |
41477209 |
T |
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| Q |
119 |
taagttatt--aaaataagagggattggtgtgcataatttgacacaaaagaccgaatggtccatagattaaggaatgctaac |
198 |
Q |
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| T |
41477208 |
taagttattaaaaaataagagggattggtgtacgcaatttgacacaaaagaccaaatggtccattgagtaaggaatgctaac |
41477127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 40751563 - 40751380
Alignment:
| Q |
19 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaacagattaaattcgtcc |
118 |
Q |
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| T |
40751563 |
tcttccgccaaatacatcattttttcatcagctttttgttgctctgttattgccatctcattctgtaaacaacaagatgaagaacagttttaatccgtca |
40751464 |
T |
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| Q |
119 |
taagttatt--aaaataagagggattggtgtgcataatttgacacaaaagaccgaatggtccatagattaaggaatgctaacaa |
200 |
Q |
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| T |
40751463 |
taagttattaaaaaataagaggaattggtgtacgtaatttgatccaaaagaccaaatggtccatagagtaaggaatgataacaa |
40751380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 41484314 - 41484231
Alignment:
| Q |
19 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaa |
102 |
Q |
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| T |
41484314 |
tcttctgccaagtacatcattttttcatcagccttttgttgctcctctattgccatctcattctgtaaacaacaagatgaagaa |
41484231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 52472338 - 52472209
Alignment:
| Q |
19 |
tcttcggccaaatacatcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaacagattaaattcgtc- |
117 |
Q |
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| T |
52472338 |
tcttcagccaaatgcatcattttttcatcggcctttcgttgctcttcaattgccatctcattctgtaaacaacaagatgaagaacatatttaatatgtca |
52472239 |
T |
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| Q |
118 |
---ctaagttattaaaataagagggattgg |
144 |
Q |
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| T |
52472238 |
taattaagttattaaaataagagggattgg |
52472209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 16408417 - 16408523
Alignment:
| Q |
33 |
catcattttttcatcggccctgtgttgctctgctattgccatgttattctgtaaacaacaagatgaagaacagattaaattcgtcctaagttattaaaat |
132 |
Q |
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| T |
16408417 |
catcattttttcatcggccttttgttgctcggctattgccatctcattctgta---aacaagatgaagaatagattcaatccatcataaattgttaaaat |
16408513 |
T |
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| Q |
133 |
aagagggatt |
142 |
Q |
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| T |
16408514 |
aagagggatt |
16408523 |
T |
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