View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13637_low_5 (Length: 433)
Name: NF13637_low_5
Description: NF13637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13637_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 17801060 - 17801457
Alignment:
| Q |
16 |
acatcatcggagcgtgagcacattgatgtggaagttacggaaaccattgccgttgtgaatcataacggcgatgtgacagggcccgttttctgtcccagtc |
115 |
Q |
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| T |
17801060 |
acatcaccggagcgtgagcacattgatgtggaagtaacggaaaccattgctgttgtgaatcataacggcgatgtgactgggcctgttttctgtcccagtc |
17801159 |
T |
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| Q |
116 |
ctgacgtgaatgcgaaagctgcaacattcattgctcgtcttaggggtgaatggaggctacaaaaacttaactccatcaaggagaaaggcaatggctcatt |
215 |
Q |
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| T |
17801160 |
cagacgtgaatgcgaaagctgcaacattcattgctcgtcttaggggtgaatggaggctacaaaaacttaactccatcaaggagaaaggcaatggctcatt |
17801259 |
T |
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| Q |
216 |
gcctcatgcaagagattagttacactaaagtagggttttaagcaacggtccacgatcttggctacagcataatgattttcgatgtctttactcgactgtg |
315 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
17801260 |
gcctcatgcaagagaatagttacactaaagtagggttttaagcaacggtccgcgatcttggctacaacatattgattttcgatgtttttactcgactgtg |
17801359 |
T |
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| Q |
316 |
attgagactgtaatgcacgcatttgaattgtgacatgactgcaaccgttactgcgaccgccatttagaaccctacactacactttgtaaaaagaccta |
413 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17801360 |
gttgagactgtattgcacgcatttgaatcatgacatgactgcaaccgttactgcgaccgccatttagaaccctacactacactttgtaaaaagaccta |
17801457 |
T |
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