View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13637_low_9 (Length: 227)
Name: NF13637_low_9
Description: NF13637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13637_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 43693788 - 43693597
Alignment:
| Q |
21 |
tttcataagaaaggtttgtggattagtatgtttttattttgattgttgnnnnnnnagatatatattataatgaatgttattctttatccctttgacaggg |
120 |
Q |
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| T |
43693788 |
tttcataagaaaggtttgtggattagtatgtttttattttgcttgttgtttttttagatatatattataatgaatgttattttttatccctttgacaggg |
43693689 |
T |
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| Q |
121 |
gatcaaactcagcttatccaaagatttggaattcccaatttcagctattgaatgtgttcagtctaacctcaggtcatgtactattgttaact |
212 |
Q |
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| T |
43693688 |
gatcaaactcagcttatccaaagatttggaattcccaatttcagctattgaatgtgttccgtctaacctcagatcatgtactattgttaact |
43693597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 43684738 - 43684556
Alignment:
| Q |
23 |
tcataagaaaggtttgtggattagtatgtttttattttgattgttgnnnnnnnagatatatattataatgaatgttattctttatccctttgacagggga |
122 |
Q |
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| T |
43684738 |
tcatcagaaaggtttgtggattagtatgtttttcttttccttgttcttttttta-atatatattttaatgaatgttattttttatcccttcgacagtggc |
43684640 |
T |
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| Q |
123 |
tcaaactcagcttatccaaagatttggaattcccaatttcagctattgaatgtgttcagtctaacctcaggtcatgtactattgtt |
208 |
Q |
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| T |
43684639 |
tggacc--agcttatctaaagatttggaatgcccattttcagctcttgaatgcgttttgtctcacctaaggccatgtactattgtt |
43684556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 28720213 - 28720138
Alignment:
| Q |
130 |
cagcttatccaaagatttggaattcccaatttcagctattgaatgtgttcagtctaacctcaggtcatgtactatt |
205 |
Q |
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| T |
28720213 |
cagcttatccaaggattgggattgcccaattttgggtattgaatgtgttgagtctcacctcaggtcatgtactatt |
28720138 |
T |
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