View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13638_high_1 (Length: 589)

Name: NF13638_high_1
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13638_high_1
NF13638_high_1
[»] chr5 (36 HSPs)
chr5 (224-581)||(37428339-37428695)
chr5 (357-581)||(37382975-37383199)
chr5 (357-581)||(37434997-37435221)
chr5 (376-580)||(37593492-37593696)
chr5 (376-580)||(37695883-37696087)
chr5 (376-581)||(37532387-37532592)
chr5 (371-580)||(37823192-37823401)
chr5 (371-580)||(37401661-37401870)
chr5 (371-580)||(37639034-37639243)
chr5 (357-561)||(37393526-37393730)
chr5 (371-526)||(37710846-37711001)
chr5 (357-526)||(37702025-37702194)
chr5 (224-341)||(37639719-37639836)
chr5 (224-341)||(37382531-37382648)
chr5 (224-341)||(37393082-37393199)
chr5 (224-341)||(37711477-37711594)
chr5 (224-341)||(37823742-37823859)
chr5 (224-298)||(37413452-37413526)
chr5 (224-341)||(37401068-37401185)
chr5 (112-213)||(6273241-6273342)
chr5 (357-442)||(37413814-37413899)
chr5 (224-341)||(37594177-37594294)
chr5 (224-341)||(37696568-37696685)
chr5 (224-341)||(37702521-37702638)
chr5 (115-211)||(14351830-14351926)
chr5 (159-211)||(17644142-17644194)
chr5 (139-213)||(32383804-32383878)
chr5 (263-341)||(37532938-37533016)
chr5 (268-341)||(37401247-37401320)
chr5 (268-341)||(37594042-37594115)
chr5 (268-341)||(37639584-37639657)
chr5 (268-341)||(37696433-37696506)
chr5 (268-341)||(37711342-37711415)
chr5 (159-211)||(18942364-18942416)
chr5 (159-211)||(35456622-35456674)
chr5 (252-340)||(37435549-37435637)
[»] chr4 (10 HSPs)
chr4 (357-581)||(16843645-16843869)
chr4 (357-581)||(16846313-16846536)
chr4 (357-581)||(24218380-24218604)
chr4 (97-212)||(43245591-43245705)
chr4 (97-195)||(13428667-13428764)
chr4 (224-341)||(16843066-16843183)
chr4 (236-341)||(16845877-16845982)
chr4 (154-218)||(10006678-10006742)
chr4 (224-341)||(24217936-24218053)
chr4 (159-211)||(4414530-4414582)
[»] chr3 (4 HSPs)
chr3 (397-572)||(14552668-14552843)
chr3 (172-211)||(51537138-51537177)
chr3 (159-211)||(29727852-29727904)
chr3 (111-197)||(35054597-35054683)
[»] chr8 (4 HSPs)
chr8 (97-218)||(26403518-26403632)
chr8 (172-211)||(28761630-28761669)
chr8 (111-212)||(38712111-38712212)
chr8 (111-195)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (111-212)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (111-212)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (116-213)||(3794258-3794355)
chr1 (111-213)||(3014060-3014162)
chr1 (149-211)||(32364236-32364298)
chr1 (111-213)||(24638812-24638914)
chr1 (111-213)||(44410825-44410927)
chr1 (111-218)||(40960100-40960207)
[»] chr7 (5 HSPs)
chr7 (97-208)||(35331681-35331793)
chr7 (138-213)||(31813601-31813676)
chr7 (139-213)||(5419006-5419080)
chr7 (172-213)||(46170754-46170795)
chr7 (172-212)||(33610704-33610744)
[»] chr2 (5 HSPs)
chr2 (113-213)||(6065401-6065501)
chr2 (159-211)||(16106651-16106703)
chr2 (159-211)||(21800619-21800671)
chr2 (172-213)||(10810507-10810548)
chr2 (140-213)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (172-211)||(29419718-29419757)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 224 - 581
Target Start/End: Complemental strand, 37428695 - 37428339
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||  ||||||||  |||||||||    
T  37428695 ctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttccaattccaccttatggcattgaatactttttac 37428596  T
Q  324 tctctaacaacaacttcatgcatcaaatactttttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatc 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37428595 tctctaacaacaacttcatgcatcaaatactttttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaaacatc 37428496  T
Q  424 catttcccaagttgagaattttcgacatctctaataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaa 523  Q
    || ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428495 ca-ttcccaagttgagaattttcgacatctataataaaatttttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaa 37428397  T
Q  524 tgatagccaaattggtttgcagtacatgggtaaggccaattactataatgattctgtg 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428396 tgatagccaaattggtttgcagtacatgggtaaggccaattactataatgattctgtg 37428339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 357 - 581
Target Start/End: Original strand, 37382975 - 37383199
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| |||| |||||||||||||||||| |||||  ||||||| || ||||  ||||| |||||||||||||||||||||||||| ||  ||||||    
T  37382975 ttacaggtgctcagtttaagatcaaataaacttcatggcgcaatcacatgctctagcaccaaacatccatttcccaagttgagaatttttgatgtctcta 37383074  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
    | |||||||||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||||| |   | | ||||||||| |||||||||||    
T  37383075 acaacaattttattgggcccttgccaacatcgtgcatcaagaattttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtaa 37383174  T
Q  557 ggccaattactataatgattctgtg 581  Q
    | |||||||||||||||||||||||    
T  37383175 gtccaattactataatgattctgtg 37383199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 357 - 581
Target Start/End: Complemental strand, 37435221 - 37434997
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| |||| ||||||||||||||||||  ||||| ||||||| |||||||  ||||| ||||| ||| | ||||| |||||||| |||||||       
T  37435221 ttacaggtactcagtttaagatcaaataaacttaatggttcaatcacctgttctaacaccaaccatcctttttctaagttaagaatttttgacatcttcg 37435122  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
     |||||||||||||||  ||||||| ||| |||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  37435121 gtaacaattttagtggatccttgccaacatcatgtatcaagaactttcaaggaatgatgaatgtgaatgatagccagattggtttgcaatacatgggtaa 37435022  T
Q  557 ggccaattactataatgattctgtg 581  Q
    |  ||||||||||||||||||||||    
T  37435021 gaacaattactataatgattctgtg 37434997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 376 - 580
Target Start/End: Complemental strand, 37593696 - 37593492
Alignment:
Q  376 gatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagtggtcc 475  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||| ||||||| |||||||||||||| ||  | ||||  |||||||||||||| ||    
T  37593696 gatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcc 37593597  T
Q  476 cttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataatgat 575  Q
    |||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||   ||||||||||||||    
T  37593596 cttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgtgggttattactataatgat 37593497  T
Q  576 tctgt 580  Q
    |||||    
T  37593496 tctgt 37593492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 376 - 580
Target Start/End: Complemental strand, 37696087 - 37695883
Alignment:
Q  376 gatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagtggtcc 475  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||| ||||||| |||||||||||||| ||  | ||||  |||||||||||||| ||    
T  37696087 gatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctatcaacaattttagtgggcc 37695988  T
Q  476 cttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataatgat 575  Q
    |||||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||| |||| |||| | |   ||||||||||||||    
T  37695987 cttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgacggttattactataatgat 37695888  T
Q  576 tctgt 580  Q
    |||||    
T  37695887 tctgt 37695883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 376 - 581
Target Start/End: Complemental strand, 37532592 - 37532387
Alignment:
Q  376 gatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagtggtcc 475  Q
    |||||||||| || |||||| |||||||||||||||  ||||||||| ||||||| |||||||||||||| ||  | ||||| |||||||||||||| ||    
T  37532592 gatcaaataatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgtttctaacaacaattttagtgggcc 37532493  T
Q  476 cttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataatgat 575  Q
    |||||| | | ||||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||   ||||||||||||||    
T  37532492 cttgccaatatcatgcatcaagaactttaaaggaatgatgaatgtgaatgacagccaaattggtttgcaatacaagggtgcgggttattactataatgat 37532393  T
Q  576 tctgtg 581  Q
    ||||||    
T  37532392 tctgtg 37532387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 371 - 580
Target Start/End: Complemental strand, 37823401 - 37823192
Alignment:
Q  371 tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagt 470  Q
    |||| |||||||||| || |||||| ||||||| |||||||  ||||||||| |||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  37823401 tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt 37823302  T
Q  471 ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactata 570  Q
    || |||||||| ||| ||||||||| ||| |||||||||||||||||||||| |||   ||||||||||||||| ||||||||| |  |  ||||||| |    
T  37823301 gggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgagtgacgaccaaattggtttgcaatacatgggtgactcttattactaca 37823202  T
Q  571 atgattctgt 580  Q
    ||||||||||    
T  37823201 atgattctgt 37823192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 371 - 580
Target Start/End: Original strand, 37401661 - 37401870
Alignment:
Q  371 tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagt 470  Q
    |||| |||||||||| || |||||| ||||||| |||||||  ||||||||| |||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  37401661 tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt 37401760  T
Q  471 ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactata 570  Q
    || |||||||| ||| ||||||||| ||| |||||||||||||||||||||||||| |   | | ||||||||| ||||||||| |  |  ||||||| |    
T  37401761 gggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactaca 37401860  T
Q  571 atgattctgt 580  Q
    ||||||||||    
T  37401861 atgattctgt 37401870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 371 - 580
Target Start/End: Complemental strand, 37639243 - 37639034
Alignment:
Q  371 tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagt 470  Q
    |||| |||||||||| || |||||| ||||||| |||||||  ||||||||| |||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  37639243 tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt 37639144  T
Q  471 ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactata 570  Q
    || |||||||| ||| ||||||||| ||| |||||||||||||||||||||||||| |   | | ||||||||| ||||||||| |  |  ||||||| |    
T  37639143 gggcccttgccaacatcatgcatcaagaactttcaaggaatgatgaatgtgaatgacaataacactggtttgcaatacatgggtgactcttattactaca 37639044  T
Q  571 atgattctgt 580  Q
    ||||||||||    
T  37639043 atgattctgt 37639034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 357 - 561
Target Start/End: Original strand, 37393526 - 37393730
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| || | |||| |||||||| | || |||||  ||||||| |||||||  ||||||||||||||||| |||||||||||||  ||  ||||||    
T  37393526 ttacaggtgctaagtttacgatcaaatcatcttcatgggtcaatcacatgttctagcaccaagcatccatttcctaagttgagaatttatgatgtctcta 37393625  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
     ||||||||||||||| |||||||| ||| ||||| ||| ||| ||||||||||||||| |||||||| | ||||||||||||||||| |||||||||||    
T  37393626 gtaacaattttagtggccccttgccaacatcatgcttcaagaactttcaaggaatgatggatgtgaataacagccaaattggtttgcaatacatgggtaa 37393725  T
Q  557 ggcca 561  Q
     ||||    
T  37393726 agcca 37393730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 371 - 526
Target Start/End: Complemental strand, 37711001 - 37710846
Alignment:
Q  371 tttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagt 470  Q
    |||| |||||||||| || |||||| ||||||| |||||||  ||||||||| |||||||||||||||||||||| ||  ||||||| ||||||||||||    
T  37711001 tttacgatcaaataatcttcatggtgcaatcacctgttctagcaccaagcatacatttcccaagttgagaatttttgatgtctctaacaacaattttagt 37710902  T
Q  471 ggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatga 526  Q
    || ||||||||  || ||||||||| ||| ||||||||||||||||| ||||||||    
T  37710901 gggcccttgccagcatcatgcatcaagaactttcaaggaatgatgaaggtgaatga 37710846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 357 - 526
Target Start/End: Complemental strand, 37702194 - 37702025
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| || | |||| |||||||| | || |||||| |||||||||||||||  ||||||||| ||||||| |||||||||||||| ||   |||||    
T  37702194 ttacaggtgctgagtttacgatcaaatcatcttcatggtgcaatcacttgttctagcaccaagcattcatttcctaagttgagaatttttgatgcctcta 37702095  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatga 526  Q
    | |||||||||||||| |||||||| ||| ||||||||| ||| |||||||||||||| ||||| |||||    
T  37702094 acaacaattttagtggccccttgccaacatcatgcatcaagaactttcaaggaatgattaatgtaaatga 37702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37639836 - 37639719
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| ||||||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37639836 ctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacctgatggcattgtatactttttac 37639737  T
Q  324 tctctaacaacaacttca 341  Q
    |||| || ||||||||||    
T  37639736 tctcaaataacaacttca 37639719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 37382531 - 37382648
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||||||||||||| |||||||   ||  ||||||| |||| ||||||||||||||||||||||||||| |||  ||  |||||| |  |||||||||    
T  37382531 ctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttccaatcccacgttatggcatttactactttttac 37382630  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  37382631 tctcgaacaacaacttca 37382648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 37393082 - 37393199
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||   |||||||| || |||| ||||||||| ||||| ||||||||||||||| ||   ||||||||  |||||||||    
T  37393082 ctcttaaactcatggaaggacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacctgatggcattgaagactttttac 37393181  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  37393182 tctcaaacaacaacttca 37393199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37711594 - 37711477
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||||||||| | |  |||||| |  |||||| ||    
T  37711594 ctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattccaccatctggcattcaatacttttcac 37711495  T
Q  324 tctctaacaacaacttca 341  Q
    |||| || ||||||||||    
T  37711494 tctcaaataacaacttca 37711477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37823859 - 37823742
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||||||||||||  | |||| || |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37823859 ctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37823760  T
Q  324 tctctaacaacaacttca 341  Q
    |||| || ||||||||||    
T  37823759 tctcaaataacaacttca 37823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 37413452 - 37413526
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattcca 298  Q
    |||||||||||||||| ||| ||| | || || ||||| |||| |||||||||||||||||||||||||||||||    
T  37413452 ctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttccaattcca 37413526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 37401068 - 37401185
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||  ||||||||  |||||| ||    
T  37401068 ctcttaaactcatggaaggacattcagtacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattgaatacttttcac 37401167  T
Q  324 tctctaacaacaacttca 341  Q
    |||| || ||||||||||    
T  37401168 tctcaaataacaacttca 37401185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 6273342 - 6273241
Alignment:
Q  112 tttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||    |||||||  |||||||  |||| || ||||| |||||  | ||||||||||||||||| |||||||||| |||||||||||    
T  6273342 tttagtttttaagtgtctgagtcattcattcaatccgatttaatctggttcaatacatataaaaatttaatcttaaggccgagtcatctaaccgagttat 6273243  T
Q  212 tc 213  Q
    ||    
T  6273242 tc 6273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 442
Target Start/End: Original strand, 37413814 - 37413899
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaat 442  Q
    |||||||| || | |||| |||||||||| || |||||| ||||||| |||||||  || |||||| |||||||||||||||||||    
T  37413814 ttacaggtgctaagtttacgatcaaataatcttcatggtgcaatcacctgttctagcacaaagcatacatttcccaagttgagaat 37413899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37594294 - 37594177
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||| || |||| | |||||||  | |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37594294 ctcttaaactcatggaatgagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37594195  T
Q  324 tctctaacaacaacttca 341  Q
    |||| || ||||||||||    
T  37594194 tctcaaataacaacttca 37594177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37696685 - 37696568
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||   ||||||   |||||| ||    
T  37696685 ctcttaaactcatggaaggacattcaggacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctagcattggatacttttcac 37696586  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  37696585 tctcaaacaacaacttca 37696568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37702638 - 37702521
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||   |||||| | || |||| ||| | |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37702638 ctcttaaactcatggaaggacattatacacattaacctgagtttcaaaatgttgcaaggacatcttccaattccacctcatggcattgtacactttttac 37702539  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  37702538 tctcaaacaacaacttca 37702521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 14351830 - 14351926
Alignment:
Q  115 agtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    ||||||||||||||  ||||||| |||||| |  |||| ||  | ||||||||| | ||||||||||||||||||||| |||||  |||||||||||    
T  14351830 agtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagttat 14351926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 17644142 - 17644194
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  17644142 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 17644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 32383804 - 32383878
Alignment:
Q  139 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||  |||| || || ||||||||| | |||||||||||||| |||||| ||||||  ||||||||||||    
T  32383804 gttcaatctgatttaatctgattaaatacctataaaaatttaatcttgagaccgggtcatcttaccgagttattc 32383878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 37533016 - 37532938
Alignment:
Q  263 agttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||| ||||||||| ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||    
T  37533016 agtttcaacaagttacaaggagatcttccaattccacctgatggcattggatacttttcactctcaaataacaacttca 37532938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 37401247 - 37401320
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || ||||||||||    
T  37401247 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttca 37401320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 37594115 - 37594042
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||    
T  37594115 caacaactttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttca 37594042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 37639657 - 37639584
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || ||||||||||    
T  37639657 caacaactttcaaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttca 37639584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 37696506 - 37696433
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||    
T  37696506 caacaattttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttca 37696433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 37711415 - 37711342
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttca 341  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || ||||||||||    
T  37711415 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttca 37711342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 18942416 - 18942364
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||| |||||||    
T  18942416 gttaaatacctataaatatttaatcttaagaccgagtcatttaactgagttat 18942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 35456674 - 35456622
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||| ||||||  |||||||||||    
T  35456674 gttaaatacctataaatatttaatcttaagaccaagtcatttaaccgagttat 35456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 37435637 - 37435549
Alignment:
Q  252 acattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttc 340  Q
    ||||||| || |||| |||||| |||||||||||  ||||||||||| |    ||||||||  ||||||| ||||| ||||||||||||    
T  37435637 acattgacctcagtttcaacaaattgcaaggagacattccaattccatccgatggcattgaatactttttgctctcaaacaacaacttc 37435549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 9e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 357 - 581
Target Start/End: Original strand, 16843645 - 16843869
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| ||| ||||| |||| ||||| || |||||   ||||||||||||||  ||||||||||||||||| |||||||||||||| ||  ||||||    
T  16843645 ttacaggtactcgttttacgatctaataatcttcatggagtaatcacttgttctagcaccaagcatccatttcctaagttgagaatttttgatgtctcta 16843744  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
    | ||||||||||||||  ||||||| ||| ||||||||  ||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |     
T  16843745 acaacaattttagtggcaccttgccaacatcatgcatccagaactttcaaggaatgatgaatgtggatgatagccagattggtttgcaatacatgggcac 16843844  T
Q  557 ggccaattactataatgattctgtg 581  Q
    || ||||||||| || |||||||||    
T  16843845 ggacaattactacaacgattctgtg 16843869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 357 - 581
Target Start/End: Original strand, 16846313 - 16846536
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    ||||| || |||| |||||| |||||||||||  ||||| ||||||| |||||||  ||||||||||||||||| || ||||||||||| |||||||       
T  16846313 ttacatgtactcagtttaaggtcaaataaactttatggttcaatcacatgttctagcaccaagcatccatttccaaa-ttgagaattttggacatcttcg 16846411  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
    ||||||| || ||||| || ||||| ||| |||| |||| ||||||||||||||||||||| | ||||||||   ||| |||||||||||||||||| ||    
T  16846412 ataacaaattcagtggaccgttgccaacatcatgtatcaagaattttcaaggaatgatgaacgcgaatgataataaaactggtttgcagtacatgggaaa 16846511  T
Q  557 ggccaattactataatgattctgtg 581  Q
    || ||||||||||||||||||||||    
T  16846512 ggtcaattactataatgattctgtg 16846536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 581
Target Start/End: Original strand, 24218380 - 24218604
Alignment:
Q  357 ttacaggttctcattttaagatcaaataaactgcatggtacaatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctcta 456  Q
    |||||||| |||| |||| |||||||| | || ||||||  ||||||||||||||  ||||| ||  ||||||| ||| ||||||||| |||  |||||     
T  24218380 ttacaggtactcagtttacgatcaaatcatcttcatggtggaatcacttgttctagcaccaaacaatcatttccgaagatgagaatttacgatgtctctg 24218479  T
Q  457 ataacaattttagtggtcccttgccgacaacatgcatcaggaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaa 556  Q
     ||| |||||  |||| ||| |||| ||| | ||| ||| |||||||||||||||||| ||||||||||  |   ||  ||||||||| |||||||||||    
T  24218480 gtaataatttccgtggccccgtgccaacatcttgcctcaagaattttcaaggaatgattaatgtgaatgtcaataaatctggtttgcaatacatgggtaa 24218579  T
Q  557 ggccaattactataatgattctgtg 581  Q
    ||||||||| |||||||||||||||    
T  24218580 ggccaattattataatgattctgtg 24218604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 43245591 - 43245705
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 196  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  43245591 atatacatattgcattttagtttttaagtgatga-gtcattagttcaattaaatttaatttggttaaataccaataacaatttaatattaagaccgagtc 43245689  T
Q  197 atccaaccgagttatt 212  Q
    ||   |||||||||||    
T  43245690 atatgaccgagttatt 43245705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 13428667 - 13428764
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||    
T  13428667 atatacatattacattttagtttttaagtg-tcgagtcattagttcaatcaaatttaatttggttgaatatcaataaaaatttaatattaagaccgagt 13428764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 16843066 - 16843183
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| |||||||||| ||||||||| |||||||||| |||| |||||| |||||||||||  ||||||||||| |||  ||| || |  ||||||  |    
T  16843066 ctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggccttcaatacttttcgc 16843165  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  16843166 tctcaaacaacaacttca 16843183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 341
Target Start/End: Original strand, 16845877 - 16845982
Alignment:
Q  236 tggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaaca 335  Q
    |||||||||||| | |||||||| || |||| |||||| |||||||||||  |||||||||||  ||  |||||| |  ||||||| ||||| |||||||    
T  16845877 tggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattccatattatggcattaaatactttttgctctcaaacaaca 16845976  T
Q  336 acttca 341  Q
    ||||||    
T  16845977 acttca 16845982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 10006678 - 10006742
Alignment:
Q  154 atttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattctattt 218  Q
    |||||||| |||||| | |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  10006678 atttggtttaatacctataaaaatttaatcttaagaccaattcatctaaccgagttattcgattt 10006742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 24217936 - 24218053
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||||||||||||||||| ||| |    ||| |||| |||| |||||||||||||||||| ||||| |||||| | |  || ||| |  |||||| ||    
T  24217936 ctcttacacacatggaaggaaattcgaattattaatctcagtttcaacaagttgcaaggagaccttccgattccaccctatggaattcaatacttttcac 24218035  T
Q  324 tctctaacaacaacttca 341  Q
    |||| |||||||||||||    
T  24218036 tctcaaacaacaacttca 24218053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 4414582 - 4414530
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  4414582 gttaaatacctataaatatttaatcttaagaccgagtcatttaatcgagttat 4414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 397 - 572
Target Start/End: Complemental strand, 14552843 - 14552668
Alignment:
Q  397 caatcacttgttctatgaccaagcatccatttcccaagttgagaattttcgacatctctaataacaattttagtggtcccttgccgacaacatgcatcag 496  Q
    ||||||| |||||||  | ||||||| ||||||| |||||||||||||| ||  ||||||| ||||||||||||||  ||||||| ||| |||||||||     
T  14552843 caatcacctgttctagcatcaagcattcatttcctaagttgagaatttttgatgtctctaacaacaattttagtggcaccttgccaacatcatgcatcaa 14552744  T
Q  497 gaattttcaaggaatgatgaatgtgaatgatagccaaattggtttgcagtacatgggtaaggccaattactataat 572  Q
    ||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||  |||||||||    
T  14552743 gaactttcaaggaatgatgaacgtgaatgacagccaaattggtttgcaatacatgggtaaagccagctactataat 14552668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 51537138 - 51537177
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  51537138 aaaaatttaatcttaagaccgagtcatctaaccgagttat 51537177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 29727904 - 29727852
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||||||    
T  29727904 gttaaatagctataaaaatttaatcttaagaccgagtcatctaactgagttat 29727852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 35054597 - 35054683
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtca 197  Q
    |||||||||||||||||    |||||  |||||||| ||||| || | |||||||||  | |||||||||||| |||||||||||||    
T  35054597 ttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtca 35054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 26403518 - 26403632
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 196  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||       ||||||||||| ||||||| ||||||| |||| ||||    
T  26403518 atatacatattacattttagtttttaagtggtcgagtcattagttgactcaaattt-------ttaaataccaataaaaattgaatcttacgaccaagtc 26403610  T
Q  197 atccaaccgagttattctattt 218  Q
    |||  |||||||||||||||||    
T  26403611 atctgaccgagttattctattt 26403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 28761630 - 28761669
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28761630 aaaaatttaatcttaagaccgagtcacctaaccgagttat 28761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 38712111 - 38712212
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||| ||| |  |||||||||    
T  38712111 ttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatcgtaagaccgaatcaacttaccgagtta 38712210  T
Q  211 tt 212  Q
    ||    
T  38712211 tt 38712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 32493073 - 32493157
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| |||||||||||    
T  32493073 ttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagt 32493157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4816 - 4917
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4816 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4915  T
Q  211 tt 212  Q
    ||    
T  4916 tt 4917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4836 - 4937
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4836 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4935  T
Q  211 tt 212  Q
    ||    
T  4936 tt 4937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 3794355 - 3794258
Alignment:
Q  116 gtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    |||||||||| ||  |||||| |||||||||  |||| || || ||||||||| | |||||||||||||||||| || |||||| |||||||||||||    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattc 3794258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 3014060 - 3014162
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    ||||||||||||||| ||  |||||   ||||||||  |||| || | |||||||||| | ||||||||||||||||||||| |||||  ||||||||||    
T  3014060 ttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtta 3014159  T
Q  211 ttc 213  Q
    |||    
T  3014160 ttc 3014162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 32364298 - 32364236
Alignment:
Q  149 attttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||| |||||||||||    
T  32364298 atttaatttggttaaatagttataaaaatttaatcttaagaccgagtcatctaaccgagttat 32364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 24638914 - 24638812
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||||||| |  |||||||||    
T  24638914 ttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtta 24638815  T
Q  211 ttc 213  Q
    |||    
T  24638814 ttc 24638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 44410927 - 44410825
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||| ||||||||||||   ||||||| ||||||||  |||| ||  |||||| |||| | ||| |||||||||||| ||||||||||| | ||||||||    
T  44410927 tttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtta 44410828  T
Q  211 ttc 213  Q
    |||    
T  44410827 ttc 44410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 40960100 - 40960207
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||  | |||||||  ||||||||  || | |  |||||||||||| | ||||| |||||||||||| || |||||  ||||||||||    
T  40960100 ttttagtttttaagtaatcaagtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatcttaagatcgggtcatgtaaccgagtta 40960199  T
Q  211 ttctattt 218  Q
    ||| ||||    
T  40960200 ttcaattt 40960207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 35331793 - 35331681
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagt-cattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    ||||||||||||||||||||||| ||||||   | |  ||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||  ||||    
T  35331793 atatacatattacattttagtttctaagtgtcgacggacattaattcaatcaaatttaatttggttaaatcttaataaaaatttaatcttaagatggagt 35331694  T
Q  196 catccaaccgagt 208  Q
    |||  ||||||||    
T  35331693 catttaaccgagt 35331681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 31813676 - 31813601
Alignment:
Q  138 agttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||| ||||| || |||||||||||| | |||||||||| ||||||||||  ||||| |||||||||||||    
T  31813676 agttcaatccaatttaatatggttaaatacctataaaaatttaaccttaagaccggatcatctaaccgagttattc 31813601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 5419080 - 5419006
Alignment:
Q  139 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    |||||||| ||| | || |||||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||    
T  5419080 gttcaatccaatctaatctggttaaatacctataaaaatttaatcttaagacagggtcatacaaccgagttattc 5419006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 46170795 - 46170754
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  46170795 aaaaatttaatcttaaggccgagtcatctaaccgagttattc 46170754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 33610744 - 33610704
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttatt 212  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  33610744 aaaaatttaatcttaaaaacgagtcatctaaccgagttatt 33610704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 6065401 - 6065501
Alignment:
Q  113 ttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttatt 212  Q
    |||||||||||||||   ||||||  ||||||||  |||| || || ||||||||| | ||||| ||| ||||||| || ||||||| ||||||||||||    
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  213 c 213  Q
    |    
T  6065501 c 6065501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 16106651 - 16106703
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||| | | |||||||||||||||||| ||||||||| |||||||||||    
T  16106651 gttaaatagctataaaaatttaatcttaagatcgagtcatctaaccgagttat 16106703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21800619 - 21800671
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  21800619 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 21800671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 10810507 - 10810548
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  10810507 aaaaatttaatcttacgaccgggtcatacaaccgagttattc 10810548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 26606717 - 26606644
Alignment:
Q  140 ttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||| ||| | || ||||| |||||| | ||||||||||||||||||  | |||||| |||||||||||||    
T  26606717 ttcaatccaatctaatctggttcaatacctataaaaatttaatcttaagattgggtcatctaaccgagttattc 26606644  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 29419718 - 29419757
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
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T  29419718 aaaaatttaatcttaagaccgagtcacctaaccgagttat 29419757  T

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