View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13638_high_13 (Length: 228)
Name: NF13638_high_13
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_high_13 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 15133630 - 15133436
Alignment:
| Q |
34 |
ttgaataggtttatatgaagtactgtaaactatattttaccgttattttattatactcctaattcttaaattcatatttagattgtgaaaagaataaaaa |
133 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15133630 |
ttgaataggtttatatgaagtagtgtaaacttaattttaccgttattttattatactcctaattcttaaattcatatttagattgtgaaaagaataaaaa |
15133531 |
T |
|
| Q |
134 |
gaaaaattattaccagttttccttcttgaaggatacttgcaagaataattttgaaaaagtggacaccattgttctgatgttcaagtttttgagaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15133530 |
gaaaaattattaccagttttccttcttgaaggatacttgcaagaataattttgaaaaagtggacaccattgttctgatgttcaagttcttgagaa |
15133436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 49742251 - 49742172
Alignment:
| Q |
141 |
tattaccagttttccttcttgaaggatacttgcaagaataattttgaaaaagtggacaccattgttctgatgttcaagtt |
220 |
Q |
| |
|
|||||||||||||||||| | |||| | ||| ||||||||| |||||||||||||||||||| || |||| ||||||| |
|
|
| T |
49742251 |
tattaccagttttccttcattaaggttcctttgaagaataatcttgaaaaagtggacaccattactccgatgatcaagtt |
49742172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 12866619 - 12866562
Alignment:
| Q |
144 |
taccagttttccttcttgaaggatacttgcaagaataattttgaaaaagtggacacca |
201 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||| |||||||||||||||||| |
|
|
| T |
12866619 |
taccagttttccttcttgaagatttgtttgaagaataatcttgaaaaagtggacacca |
12866562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University