View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13638_high_6 (Length: 322)
Name: NF13638_high_6
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 216
Target Start/End: Complemental strand, 13410916 - 13410723
Alignment:
| Q |
30 |
ttattaaataaaaataactgttcaagtaaatttctatcatctcaatga---aatacaaaaataaacaaataccaatgcctttctctcctttcannnnnnn |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
13410916 |
ttattaaataaaaataactgttcaagtaaatttctatcatcttaatgaaataatacaaaaataaacaaataccaatgcctttcttttctttcattttttt |
13410817 |
T |
|
| Q |
127 |
cctgcatatgtatagg----nnnnnnnntatgaaggaaactttactattgtgtgaacgataattttaaatggctttgatatatctctctaaata |
216 |
Q |
| |
|
||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13410816 |
cctacatatgtataggagaaaaaaaaaaaatgaaggaaacttaactattgagtgaacgataattttaaatggctttgatatatctctctaaata |
13410723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 13410687 - 13410635
Alignment:
| Q |
252 |
gtaatatcaagaattggaatgaatcaagttatgactatcctcacaaccgcatt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13410687 |
gtaatatcaagaattggaatgaatcaagttatgactatcctcacaaccgcatt |
13410635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University