View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13638_low_11 (Length: 245)
Name: NF13638_low_11
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 48078246 - 48078472
Alignment:
| Q |
1 |
gtctttcccctataagaggaaacttgtgagaagagataatggagtataaccaatatcaatctttttaaccaacaaatttccgatgagtttacacaataat |
100 |
Q |
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| T |
48078246 |
gtctttcccctataagaggaaacttgtgagaagagataatggagtataaccaatatcaatctttttaaccaacacatttccgatgagtttacacaataat |
48078345 |
T |
|
| Q |
101 |
caagtccgtgcaccgataccatttctattcataacaatcatgcacccaccagatccaccaattcataacatccacaaaattagaacaaagaacacaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48078346 |
caagtccgtgcaccgataccatttctattcataacaatcatgcacccaccagatccaccaattcataacatccacaaaattagaacaaagaacacaacca |
48078445 |
T |
|
| Q |
201 |
ccaaatactagattggtgcgggatcac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48078446 |
ccaaatactagattggtgcgggatcac |
48078472 |
T |
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