View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13638_low_12 (Length: 233)
Name: NF13638_low_12
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 47687856 - 47688057
Alignment:
| Q |
13 |
agcagagaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
112 |
Q |
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| T |
47687856 |
agcagggaggagcacactacatgcaggctcagcagatgacacaacaacaacaactaatggctgcacgttcctcccttttatttgcacagcaacagcagca |
47687955 |
T |
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| Q |
113 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
212 |
Q |
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| T |
47687956 |
gcaaccttactcagcccttcaacagcaccaacttggaggcggtggaacttcaggactacacatgatgcaaagcgaagcctgtagcaatatgaacgtggga |
47688055 |
T |
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| Q |
213 |
gg |
214 |
Q |
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|| |
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| T |
47688056 |
gg |
47688057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 35836645 - 35836602
Alignment:
| Q |
39 |
gctcagcagatgacacaacaacaacaactaatggctgcacgttcctc |
85 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35836645 |
gctcagcagatgacacaacaacaat---taatggctgcacgttcctc |
35836602 |
T |
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