View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13638_low_4 (Length: 390)
Name: NF13638_low_4
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 37789827 - 37789475
Alignment:
| Q |
19 |
tgcatgttgtggttccatatgcccattttggttctgatgatgtgtattatgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtag |
118 |
Q |
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| T |
37789827 |
tgcatgttgtagttccatatgcccattttggttctgatgatgtgtattatgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtag |
37789728 |
T |
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| Q |
119 |
aatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatgtatgg |
218 |
Q |
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| T |
37789727 |
aatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatgtatgg |
37789628 |
T |
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| Q |
219 |
aa---caaaagcatataatagagtaactaatagtgtaaaataactgagaatataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaa |
315 |
Q |
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| T |
37789627 |
aaaatcaaaagcatataatagagtaact----------aataactgataatataggaaacaagataaaatgcagcaagtgtgtagtgagtacccgaagaa |
37789538 |
T |
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| Q |
316 |
tattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatga |
378 |
Q |
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| T |
37789537 |
tattgccatgatgaaggtaatgcctggagtaaggttgaacatagcgaacataaatgttgatga |
37789475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 37800667 - 37800479
Alignment:
| Q |
19 |
tgcatgttgtggttccatatgcccattttggttctgatgatgtgtattatgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtag |
118 |
Q |
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| T |
37800667 |
tgcatgttgcggctccatatgcccattttggttctgatg---tgcat---gcaaaaggttaatatttgatgaacgaatattgatttctgctccattgtaa |
37800574 |
T |
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| Q |
119 |
aatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatg |
213 |
Q |
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| T |
37800573 |
aatgtcatcagcatcgcaccactaattccaattgctgttcccatcactttagcctttccttctgctagactccaattcaatttttccaatctatg |
37800479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 37807976 - 37807836
Alignment:
| Q |
73 |
aaggttgatatttgatgaccaaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcc |
172 |
Q |
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| T |
37807976 |
aaggttgatattggaagaccaaatattaatttccactcctttgtaaaatatcataagcattgccccaccaatgccaattactgttcctattactttggcc |
37807877 |
T |
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| Q |
173 |
tttccttctactacactccaatttagtttttccaatctatg |
213 |
Q |
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| T |
37807876 |
tttccctctactaatccccaatttagcttttccaatctatg |
37807836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 374
Target Start/End: Complemental strand, 37798361 - 37798286
Alignment:
| Q |
299 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttg |
374 |
Q |
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| T |
37798361 |
agtgagtacccaaataatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttg |
37798286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 37781400 - 37781213
Alignment:
| Q |
20 |
gcatgttgtggttccatatgcccattttggttctgatgatgtgtattatgtaaaaggttgatatttgatgaccaaatattaatttctgctcctttgtaga |
119 |
Q |
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| T |
37781400 |
gcatgtagtggttccataagtccattttggtt---atgatgtggat---gcataaggtttatattggaagtccaaatatcaatttctactcctctgtaaa |
37781307 |
T |
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| Q |
120 |
atgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaatttagtttttccaatctatg |
213 |
Q |
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| T |
37781306 |
atatcatcaccattgccccactgatgctaattattgttcctattaccttggcttttccttctgctaatccccaatttagcttttccaatctatg |
37781213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 37780876 - 37780823
Alignment:
| Q |
299 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttg |
352 |
Q |
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| T |
37780876 |
agtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttg |
37780823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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