View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13638_low_5 (Length: 370)

Name: NF13638_low_5
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13638_low_5
NF13638_low_5
[»] chr7 (4 HSPs)
chr7 (19-354)||(42029698-42030033)
chr7 (191-264)||(10325121-10325194)
chr7 (198-238)||(717501-717541)
chr7 (184-236)||(40901853-40901905)
[»] chr1 (3 HSPs)
chr1 (184-286)||(51080720-51080822)
chr1 (184-236)||(2536530-2536582)
chr1 (184-236)||(11351645-11351697)
[»] chr2 (2 HSPs)
chr2 (184-286)||(40287065-40287167)
chr2 (184-236)||(29894369-29894421)
[»] chr3 (3 HSPs)
chr3 (191-247)||(38998907-38998963)
chr3 (191-238)||(27265807-27265854)
chr3 (184-236)||(36684916-36684968)
[»] chr6 (3 HSPs)
chr6 (191-238)||(13757556-13757603)
chr6 (191-238)||(19047096-19047143)
chr6 (184-236)||(942704-942756)
[»] chr5 (2 HSPs)
chr5 (184-238)||(14856970-14857024)
chr5 (202-286)||(32163040-32163124)
[»] chr8 (2 HSPs)
chr8 (194-239)||(14541224-14541269)
chr8 (195-287)||(11911423-11911515)
[»] chr4 (2 HSPs)
chr4 (195-238)||(2087389-2087432)
chr4 (184-236)||(1394136-1394188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (184-236)||(48113-48165)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 42029698 - 42030033
Alignment:
Q  19 ggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgannnnnnngttgagggaagcaactcaatgcatttaagtgggactag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| ||    
T  42029698 ggaattggatggatgaggtgttcatcaatcttttgtctaaaaataaacgatttgacttttttgttgagggaagcaactcaatgcatttaagtgggaccag 42029797  T
Q  119 cattatatgggaccaaatacatgaaggaacatcatcataaaaaattatatgggactagctgtatcaattcacgagcgaccccattagtttgcctcatatt 218  Q
    ||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||    
T  42029798 cattatatgggaccaaatacatgaaggtatatcatcatcaaacattatataggactaaccgtatcaattcacgagcgaccccattaatttgcctcatatt 42029897  T
Q  219 aaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagagca 318  Q
    ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42029898 aaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaaccaaatgagtctacaacattcttaaagtcgagagca 42029997  T
Q  319 aaatccaaattataaagttgaaggtctaatgttcat 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  42029998 aaatccaaattataaagttgaaggtctaatgttcat 42030033  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 10325121 - 10325194
Alignment:
Q  191 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtcta 264  Q
    |||||||| |||| ||||||||| |||||||||| ||||||||||| || |||| |||||| |||| |||||||    
T  10325121 gagcgacctcattcgtttgcctcctattaaactcgacatgagagttgtttaaacaattaagtaacaattgtcta 10325194  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 717541 - 717501
Alignment:
Q  198 cccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    |||||||| ||| ||| ||||||||||||||||||||||||    
T  717541 cccattagcttgtctcctattaaactcaacatgagagtttt 717501  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 40901853 - 40901905
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  40901853 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 40901905  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 51080720 - 51080822
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 283  Q
    |||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  51080720 aattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 51080819  T
Q  284 caa 286  Q
    |||    
T  51080820 caa 51080822  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 2536530 - 2536582
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  2536530 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 2536582  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 11351645 - 11351697
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  11351645 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 11351697  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 40287065 - 40287167
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaac 283  Q
    |||||| ||| ||||||||||| |||||||||||||||||  |||||||||||||  |||||||   | ||||  |||||| |||||| |||||||||||    
T  40287065 aattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagttttgaaaactatcctgaaacaactgtctacatgcagtaataatacaac 40287164  T
Q  284 caa 286  Q
    |||    
T  40287165 caa 40287167  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 29894369 - 29894421
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||||||| | ||||||| |||| ||||| |||||||||||    
T  29894369 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 29894421  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 38998963 - 38998907
Alignment:
Q  191 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactat 247  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||  |||||||    
T  38998963 gagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactat 38998907  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 27265854 - 27265807
Alignment:
Q  191 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  27265854 gagcgacctcattagtttgtctcttattaaactcaacatgagagtttt 27265807  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 36684968 - 36684916
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  36684968 aattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagtt 36684916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 13757556 - 13757603
Alignment:
Q  191 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  13757556 gagcgacctcattagtttgcttcttattaaactcaacatgagagtttt 13757603  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 19047143 - 19047096
Alignment:
Q  191 gagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    |||||||| |||||| ||||||| |||||||||| |||||||||||||    
T  19047143 gagcgaccacattagcttgcctcctattaaactcgacatgagagtttt 19047096  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 942756 - 942704
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||||||||||||||||| | ||||||| |||| ||||| |||| ||||||    
T  942756 aattcacgagcgaccccattggcttgcctcctattgaactcgacattagagtt 942704  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 14856970 - 14857024
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    |||||| |||||| | |||| |||||||||||||||||||| |||||||||||||    
T  14856970 aattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagtttt 14857024  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 32163124 - 32163040
Alignment:
Q  202 ttagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaa 286  Q
    |||||||||||| |||||||||| | |||||||||||  |||||||   | ||||  |||||| | |||| ||||||||||||||    
T  32163124 ttagtttgcctcctattaaactcgatatgagagttttgaaaactatcctgaaacaactgtctacaggcagtaataatacaaccaa 32163040  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 14541269 - 14541224
Alignment:
Q  194 cgaccccattagtttgcctcatattaaactcaacatgagagttttt 239  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||    
T  14541269 cgaccacattagtttgcctcatattaaactcaatacgagagttttt 14541224  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 11911423 - 11911515
Alignment:
Q  195 gaccccattagtttgcctcatattaaactcaacatgagagtttttgaaactattaaggaacatttgtctatatgcagaaataatacaaccaaa 287  Q
    ||||||||| |||| |||| |||| ||||| |||||||||||||  ||||||||||  |||  ||||||| || || | || |||||||||||    
T  11911423 gaccccattcgtttacctcctattgaactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 2087389 - 2087432
Alignment:
Q  195 gaccccattagtttgcctcatattaaactcaacatgagagtttt 238  Q
    ||||||||||||||||||| ||||||| | ||||||||||||||    
T  2087389 gaccccattagtttgcctcgtattaaatttaacatgagagtttt 2087432  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 1394188 - 1394136
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| || |||||||||||| ||||||| |||| ||||| |||||||||||    
T  1394188 aattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagtt 1394136  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 48165 - 48113
Alignment:
Q  184 aattcacgagcgaccccattagtttgcctcatattaaactcaacatgagagtt 236  Q
    |||||| ||||||||  ||||||||||||| |||| ||||| |||||||||||    
T  48165 aattcatgagcgaccatattagtttgcctcctattcaactcgacatgagagtt 48113  T

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