View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13638_low_7 (Length: 296)
Name: NF13638_low_7
Description: NF13638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13638_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 281
Target Start/End: Original strand, 36222879 - 36223148
Alignment:
| Q |
12 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36222879 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaagagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
36222978 |
T |
|
| Q |
112 |
tagtaatgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaaaata |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36222979 |
tagtaatgaaaatctgagattacaagcttatatacaactacttatatggcttacttgcaatacaagtaatcaatc-aaactaactaactccatcaaaata |
36223077 |
T |
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| Q |
212 |
gctaaccaaaaactaactgtttttaactactc-nnnnnnncaactaacttgaattaaaatacaacaaaagt |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36223078 |
gctaaccaaaaactaactgtttttaactactctttttttccaactaacttgaattaaaatacaacaaaagt |
36223148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 36226925 - 36227157
Alignment:
| Q |
12 |
agagatcacttcattcacaagcaatcaagattgggagagaattaggagaaatcaaaagagaagaaagagaaatcaatgtgattgtaaactatgttctcat |
111 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36226925 |
agagattacttcattcacaagcaatcgagattgggagagaattaggggaaat-aagagagaagaaagagagatcaatgtgattgtaaactatgttctcat |
36227023 |
T |
|
| Q |
112 |
ta----gtaatgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaactaactaactccatcaa |
207 |
Q |
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| T |
36227024 |
tatttagtaatgaaaatctaagattacaagcttatata-aacaacttatgtggcttacttgcaatacaagtaatcaatcaaaaccaaccaactcgatcaa |
36227122 |
T |
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| Q |
208 |
aatagctaaccaaaaactaactgtttttaactact |
242 |
Q |
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|||||||||| || ||||||||||||||||||||| |
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| T |
36227123 |
aatagctaacaaacaactaactgtttttaactact |
36227157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 13575558 - 13575506
Alignment:
| Q |
85 |
caatgtgattgtaaactatgttctcattagt-aatgaaaatctgagattacaa |
136 |
Q |
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||||||||||||||| | ||||||||||||| ||||||||| |||||||||| |
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| T |
13575558 |
caatgtgattgtaaagtgtgttctcattagtgaatgaaaattagagattacaa |
13575506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 92 - 234
Target Start/End: Complemental strand, 28067445 - 28067302
Alignment:
| Q |
92 |
attgtaaactatgttctcattagtaa-tgaaaatctgagattacaagcttatatacaactacttatgtcgcttacttgcaatacaagtaatcaatcaaaa |
190 |
Q |
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||||||||||||||| |||||||||| |||| || |||||||||| | || ||||||| || |||| | ||||||| ||||||||||||| | |||||| |
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| T |
28067445 |
attgtaaactatgttttcattagtaaatgaagatatgagattacaggtttttatacaattatttatatgacttacttccaatacaagtaattattcaaaa |
28067346 |
T |
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| Q |
191 |
ctaactaactccatcaaaatagctaaccaaaaactaactgtttt |
234 |
Q |
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||||||||||||||||||||||||||| || | |||||||||| |
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| T |
28067345 |
ctaactaactccatcaaaatagctaacaaactaataactgtttt |
28067302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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