View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13639_high_3 (Length: 395)
Name: NF13639_high_3
Description: NF13639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13639_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 40465990 - 40465607
Alignment:
| Q |
1 |
acttcgattcttttttcctacggagaggatttgtagatgaataatttgaagctcttcttggagattccataggagagatattgggagaattcatttgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465990 |
acttcgattcttttttcctacggagaggatttgtagatgaataatttgaagctcttcttggagattccataggagagatattgggagaattcatttgatt |
40465891 |
T |
|
| Q |
101 |
cttctggtttgatcgatatactttttgttcaacatcttcatccttgatatttttcttaggttcaggtgagaaaatattgattttatcggaatccacagat |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465890 |
cttctggtttgatcgatatacttttggttcaacatcttcatccttgatatttttcttaggttcaggtgagaaaatattgattttatcggaatccacagat |
40465791 |
T |
|
| Q |
201 |
gcatcataatgctcagaatccaaatcgtcttcaatctcttcaattatgctctcctgcataaggtaatttatcataacgcctatatgaatgtgctactata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465790 |
gcatcataatgctcagaatccaaatcgtcttcaatctcttcaattatgctctcctgcataaggtaatttatcataacgcctatatgaatgtgctactata |
40465691 |
T |
|
| Q |
301 |
aatccattgatcaaaagctatattattagcaataaacaaacatatagataactttctattaccttagcagcccatagtgatgat |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40465690 |
aatccattgatcaaaagctatattattagcaataaacaaacatatagataactttctattaccttagcagcccatagtgatgat |
40465607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University