View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13639_high_9 (Length: 221)

Name: NF13639_high_9
Description: NF13639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13639_high_9
NF13639_high_9
[»] chr2 (24 HSPs)
chr2 (21-212)||(10372259-10372450)
chr2 (20-207)||(10348185-10348372)
chr2 (106-207)||(10353515-10353616)
chr2 (20-80)||(9275051-9275111)
chr2 (20-80)||(9283730-9283790)
chr2 (106-170)||(9321407-9321471)
chr2 (103-165)||(9329035-9329097)
chr2 (108-170)||(9357614-9357676)
chr2 (20-76)||(8573045-8573101)
chr2 (107-170)||(10336275-10336338)
chr2 (23-80)||(10353651-10353708)
chr2 (114-170)||(9283833-9283889)
chr2 (108-170)||(9292359-9292421)
chr2 (21-79)||(12005668-12005726)
chr2 (20-80)||(9316558-9316618)
chr2 (20-80)||(9329129-9329189)
chr2 (25-80)||(9292458-9292513)
chr2 (21-66)||(8579043-8579088)
chr2 (108-165)||(9060772-9060829)
chr2 (112-165)||(9274948-9275001)
chr2 (37-78)||(10336367-10336408)
chr2 (21-58)||(11987031-11987068)
chr2 (20-80)||(9060675-9060735)
chr2 (20-80)||(9357710-9357770)
[»] chr4 (2 HSPs)
chr4 (106-207)||(26575267-26575368)
chr4 (20-72)||(26575411-26575463)
[»] chr3 (2 HSPs)
chr3 (106-170)||(37462929-37462993)
chr3 (20-67)||(37463041-37463088)
[»] scaffold0667 (2 HSPs)
scaffold0667 (103-163)||(4921-4981)
scaffold0667 (20-76)||(5011-5067)
[»] chr8 (1 HSPs)
chr8 (21-79)||(41966264-41966322)
[»] chr1 (1 HSPs)
chr1 (109-170)||(29452951-29453012)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 10372450 - 10372259
Alignment:
Q  21 tctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcaaagcctccttatgtgttcatgg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  10372450 tctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcagagcctccttatgcgttcatgg 10372351  T
Q  121 cttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccacaggttc 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10372350 cttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagcactttttatgatccacatgttc 10372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 10348372 - 10348185
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgac-cccacaatcaaagcctccttatgtgttcat 118  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| |||||     
T  10348372 atctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcac 10348274  T
Q  119 ggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 207  Q
    |||||||||||||||    ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | ||||||||||||||||    
T  10348273 ggcttcggttttgatcaaatatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccaca 10348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 10353616 - 10353515
Alignment:
Q  106 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatcca 205  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  |||| |  |||| | ||||||||||||||    
T  10353616 cttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcgatctacaaaaccctttttatgatcca 10353517  T
Q  206 ca 207  Q
    ||    
T  10353516 ca 10353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9275111 - 9275051
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    |||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275111 atctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 9283730 - 9283790
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283730 atctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 9321471 - 9321407
Alignment:
Q  106 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    |||||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321471 cttatgcgttcatggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 9329097 - 9329035
Alignment:
Q  103 ctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 165  Q
    ||||||||| ||||| || |||||||||||| |||||||||| ||||||||||||||||||||    
T  9329097 ctccttatgcgttcacggtttcggttttgatcctttatccggtgattacaaactcctcagaat 9329035  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  108 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 8573045 - 8573101
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctatt 76  Q
    |||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  8573045 atctggaaccctaacacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 170
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  107 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

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Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 10353708 - 10353651
Alignment:
Q  23 tggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| ||||    
T  10353708 tggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatcccta 10353651  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  114 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  108 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 12005668 - 12005726
Alignment:
Q  21 tctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 79  Q
    ||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005668 tctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9316618 - 9316558
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    ||||||||||||||||||||||||||| |  |||||||||| || |||||| |||| ||||    
T  9316618 atctggaaccctaacacccgtaaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9329189 - 9329129
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    ||||||||||||||||||||||||||| |  |||||||||| || |||||| |||| ||||    
T  9329189 atctggaaccctaacacccgtaaacatcgtattatccctttcctacctcttgctatcccta 9329129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 9292513 - 9292458
Alignment:
Q  25 gaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    |||||||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292513 gaaccctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 8579043 - 8579088
Alignment:
Q  21 tctggaaccctaacacccgtaaacatagggttatcccttttctccc 66  Q
    ||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579043 tctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  108 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 165  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  112 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 165  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 10336408 - 10336367
Alignment:
Q  37 ccgtaaacatagggttatcccttttctccctcttcctattcc 78  Q
    |||||||||| || ||||||||| ||||||||||||||||||    
T  10336408 ccgtaaacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 11987031 - 11987068
Alignment:
Q  21 tctggaaccctaacacccgtaaacatagggttatccct 58  Q
    |||||||||||||||||||||||||| || ||||||||    
T  11987031 tctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 9060675 - 9060735
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    |||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060675 atctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 9357770 - 9357710
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 80  Q
    |||||||||| ||||| ||||||||||    |||||||||| |||||||||||||| ||||    
T  9357770 atctggaaccataacatccgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 26575368 - 26575267
Alignment:
Q  106 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatcca 205  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||    
T  26575368 cttatgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatcca 26575269  T
Q  206 ca 207  Q
    ||    
T  26575268 ca 26575267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 26575463 - 26575411
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcc 72  Q
    |||||||||||| ||||| ||||| || || ||||||||||||||||||||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcc 26575411  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  106 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 37463088 - 37463041
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccct 67  Q
    ||||||||||||||||| |||||||||  | |||||||||||||||||    
T  37463088 atctggaaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

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Target: scaffold0667 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 4981 - 4921
Alignment:
Q  103 ctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcaga 163  Q
    ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||| ||||||||    
T  4981 ctccttatgcgttcacggcttcggttttgatcctttaaccggcgattacaaaatcctcaga 4921  T

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Target: scaffold0667; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 5067 - 5011
Alignment:
Q  20 atctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctatt 76  Q
    |||||||||||||||| ||||||||||    ||||||||||||||||||| ||||||    
T  5067 atctggaaccctaacatccgtaaacatcacattatcccttttctccctctacctatt 5011  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 41966264 - 41966322
Alignment:
Q  21 tctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 79  Q
    ||||||||||||||| | |||||||| || ||||||||||||||||| |||||||||||    
T  41966264 tctggaaccctaacatctgtaaacatcggattatcccttttctccctattcctattcct 41966322  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  109 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 170  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

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