View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13639_low_1 (Length: 736)
Name: NF13639_low_1
Description: NF13639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13639_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 23 - 721
Target Start/End: Original strand, 36763676 - 36764375
Alignment:
| Q |
23 |
cactttgaacgtgactttactgaagcaacatatttcagcttcagtaatggcacggtgacaccgtgactttataagtttccgaacacgcgcttagtagtgg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36763676 |
cactttgaacgtgactttactgaagcaacaaatttcagcttcagtaatggcacggtgacaccgtgactttataagtttccgaacacgtgcttagtagtgg |
36763775 |
T |
|
| Q |
123 |
ttgtgctaattcatagtggttagtaatagttgtgtttttctttggttcaacctggattctgttcaggccactatttattttaaggatgtgcaagttgttt |
222 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
36763776 |
ctgtgctaattcatagtggttagtaataattgtgtttttctttggttcaacctgaattctgttcaggccactatttattttaaggatatgcgagttgttt |
36763875 |
T |
|
| Q |
223 |
taacaatatttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggttcgtggctttttggggcaaccacaacttgagaatgcactcac |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763876 |
taacaatatttagcttctactatgttcaaatgattcaagtgtatttgggtttctaggttcgtggctttttggggcaaccacaacttgagaatgcactcac |
36763975 |
T |
|
| Q |
323 |
aggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatgaccagggacgacttatttaagataaatgctggaattgtgagaaccctt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36763976 |
aggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatgaccagggacgacttatttaagataaatgctggaattgtgagaaccctt |
36764075 |
T |
|
| Q |
423 |
tgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaatccagtgaattccactgtgccaattgctgctgaggtcttcaagaaag |
522 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764076 |
tgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaatccagtgaattccactgtgccaattgctgctgaggtcttcaagaaag |
36764175 |
T |
|
| Q |
523 |
ctggtacatatgatccaaagcgacttttaggagttacagccctcgatgttgtgagggcaaatacttttgtggtaagcatagctctcctcttctatctcat |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36764176 |
ctggtacatatgatccaaagcgacttttaggagttacagccctcgatgttgtgagggcaaatacttttgtggtaagcatagctctcctcttctatctcat |
36764275 |
T |
|
| Q |
623 |
aattgaatttccttcctactattgtatgagtaaatgcctgtgta-nnnnnnnnctcttgcaggcagaggtacttggtgttgatccaagagacgatgatgt |
721 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36764276 |
aattgaatttccttcctactattgtatgagtaaatgcctgtgtatttttttttctcttgcaggcagaggtacttggtgttgatccaagagacgttgatgt |
36764375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 582 - 721
Target Start/End: Complemental strand, 11657400 - 11657260
Alignment:
| Q |
582 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgta--nnnnnnnnctctt |
679 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |||||||||||| | ||||| ||||| |
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| T |
11657400 |
aatacttttgtggtaagcatagctttcctcttctatctcataactgaatttccttcttactataatatgagtaaatg-cggtgtactttccttttctctt |
11657302 |
T |
|
| Q |
680 |
gcaggcagaggtacttggtgttgatccaagagacgatgatgt |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||| |
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| T |
11657301 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgt |
11657260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 582 - 712
Target Start/End: Complemental strand, 50233467 - 50233336
Alignment:
| Q |
582 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgta--nnnnnnnnctctt |
679 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||| ||||| |
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|
| T |
50233467 |
aatactttcgtggtaagcatagctttcctcttctatctcataattgaatttccttcctactataatatgagtaaatg-cggcgtactttccttttctctt |
50233369 |
T |
|
| Q |
680 |
gcaggcagaggtacttggtgttgatccaagaga |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
50233368 |
gcaggcagaggtacttggtgttgatccaagaga |
50233336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 9e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 582 - 721
Target Start/End: Original strand, 7391445 - 7391585
Alignment:
| Q |
582 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgta--nnnnnnnnctctt |
679 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| ||||| |
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| T |
7391445 |
aatacttttgtggtaagcatagctttcctcttctatctcataattgaatttccttcttactataatatgagtaaatg-cggtgtactttccttttctctt |
7391543 |
T |
|
| Q |
680 |
gcaggcagaggtacttggtgttgatccaagagacgatgatgt |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
7391544 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgt |
7391585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 582 - 721
Target Start/End: Complemental strand, 19585667 - 19585527
Alignment:
| Q |
582 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgta--nnnnnnnnctctt |
679 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| ||||| |
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|
| T |
19585667 |
aatacttttgtggtaagcatagctttcctcttctatctcataattgaatttccttcttactataatatgagtaaatg-cggtgtactttccttttctctt |
19585569 |
T |
|
| Q |
680 |
gcaggcagaggtacttggtgttgatccaagagacgatgatgt |
721 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
19585568 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgt |
19585527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 276 - 556
Target Start/End: Complemental strand, 4990954 - 4990674
Alignment:
| Q |
276 |
taggttcgtggctttttggggcaaccacaacttgagaatgcactcacaggcatggacttggtagttatacctgctggtgtgccaaggaaacctggaatga |
375 |
Q |
| |
|
|||||||| || |||||||||||| || |||||| ||||||| ||||| ||||| |||||| | || ||||||||||| || | ||||||||||||| |
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|
| T |
4990954 |
taggttcgaggatttttggggcaaaatcagcttgaggatgcactaacaggtatggatttggtaatcattcctgctggtgttccccgtaaacctggaatga |
4990855 |
T |
|
| Q |
376 |
ccagggacgacttatttaagataaatgctggaattgtgagaaccctttgcgaaggaattgccaaatgttgccccaatgcgattgtcaacttgattagcaa |
475 |
Q |
| |
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| || || || | || || || |||||||| || || | || ||||| |||| |||||| || || || || |||||||| |||||||| ||||| |
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| T |
4990854 |
caagagatgatctcttcaatattaatgctgggatcgttaagacgctttgtgaagcaattgcaaagcaatgtcctaaggcgattgtaaacttgataagcaa |
4990755 |
T |
|
| Q |
476 |
tccagtgaattccactgtgccaattgctgctgaggtcttcaagaaagctggtacatatgatccaaagcgacttttaggagt |
556 |
Q |
| |
|
|||||| || |||||||| || ||||| |||||||| ||||| | ||||||||| |||||||| ||| |||| || ||||| |
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|
| T |
4990754 |
tccagttaactccactgttcctattgcggctgaggttttcaaaagagctggtacttatgatcccaagagactgttgggagt |
4990674 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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