View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13639_low_12 (Length: 203)
Name: NF13639_low_12
Description: NF13639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13639_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 28288693 - 28288860
Alignment:
| Q |
14 |
gaggagcagagccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagt |
113 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28288693 |
gaggagcagggccaaggaggtttacctaccaagaacttgatttggctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagctgt |
28288792 |
T |
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| Q |
114 |
ttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagac |
181 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288793 |
ttataaaggttactttttcgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagac |
28288860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 28265043 - 28264876
Alignment:
| Q |
14 |
gaggagcagagccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagt |
113 |
Q |
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| T |
28265043 |
gaggagcagggccaaggaggtttacctacaaagaacttgagttggcaaccaataacttttctaaggatagaaagttgggtcaaggtggttttggagcagt |
28264944 |
T |
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| Q |
114 |
ttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagac |
181 |
Q |
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| T |
28264943 |
ttttaaaggttactttgctgatttagatttacaagttgctgtgaagaaaatatccagagggtcaagac |
28264876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 28305060 - 28304893
Alignment:
| Q |
14 |
gaggagcagagccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagt |
113 |
Q |
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| T |
28305060 |
gaggagcagggccaaggaggtttacctacaaagaacttgagttggcaaccaataacttttctaaggatagaaagttgggtcaaggtggttttggagcagt |
28304961 |
T |
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| Q |
114 |
ttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagac |
181 |
Q |
| |
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|| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
28304960 |
ttttaaaggttactttgctgatttagatttacaagttgctgtgaagaaaatatccagagggtcaagac |
28304893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 28294858 - 28294691
Alignment:
| Q |
14 |
gaggagcagagccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagt |
113 |
Q |
| |
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||||||||| |||||| ||||| |||||| ||||||||||||| || |||||||| || | | |||||||| || |||||||||||||||||||| || |
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| T |
28294858 |
gaggagcagggccaagaaggttcacctacaaagaacttgatttggcaaccaataacttctctaaggatagaaagttgggtcaaggtggttttggagctgt |
28294759 |
T |
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| Q |
114 |
ttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatcaagagggtcaagac |
181 |
Q |
| |
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|||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
28294758 |
ttataaaggttactttgctgatttagatttacaagttgctgtgaagaaaatatcaagaggatcaagac |
28294691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 28278828 - 28278981
Alignment:
| Q |
14 |
gaggagcagagccaaggaggtttacctaccaagaacttgatttagctaccaataaatttaccgacgatagaaaattaggtcaaggtggttttggagcagt |
113 |
Q |
| |
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||||||||| |||||||||||| |||||| |||||||| ||||||| || ||||| || | |||||||| || ||||||||||| |||||||| || |
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| T |
28278828 |
gaggagcagggccaaggaggttcacctacaaagaacttaatttagccactaataacttctctagggatagaaagttgggtcaaggtgggtttggagctgt |
28278927 |
T |
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| Q |
114 |
ttataaaggttacttttttgatcaagatttagccgttgctgtgaagaaaatatc |
167 |
Q |
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||||||||| |||||||||||| ||||||| | |||||||||||||||||||| |
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| T |
28278928 |
atataaaggtaacttttttgatccagatttaccggttgctgtgaagaaaatatc |
28278981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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