View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13639_low_3 (Length: 459)
Name: NF13639_low_3
Description: NF13639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13639_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 13651617 - 13651344
Alignment:
| Q |
25 |
gaattgaagcttagggtaacattgtgaaattgatttaacatcatca---ttcaaattaatgagtctgttgtggatgtactcagtgtttaggaatgttatg |
121 |
Q |
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| T |
13651617 |
gaattgaagcttagggtaacattgtgaaattgatttaacatcatcaatattcaaactaatgagtctgttgtggatgtattcagtgtttaggaatgttatg |
13651518 |
T |
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| Q |
122 |
tgaagattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatgcggtgtttccattt |
221 |
Q |
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| T |
13651517 |
tgaagattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatgcggtgtttccattt |
13651418 |
T |
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| Q |
222 |
ttctacaatctcaattttgtgatctataggataagataagatgctatttggtagtagcattttatagtgtttgt |
295 |
Q |
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| T |
13651417 |
ttcaacaatctcaattttgtgatctataggataagataagatgctatttggtagtagctttttatagtgtttgt |
13651344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 13646536 - 13646354
Alignment:
| Q |
25 |
gaattgaagcttagggtaacattgtgaaattgatttaacatcatcattcaaattaatgagtctgttgtggatgtactcagtgtttaggaatgttatgtga |
124 |
Q |
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| T |
13646536 |
gaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtatttggtgttgaggaaagtgatgtag |
13646437 |
T |
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| Q |
125 |
agattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatg |
207 |
Q |
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| T |
13646436 |
atgttttgaattgcaagaagttcagctagctttagcattgaatttacatggccttgtgctggacatgggaagattagcacatg |
13646354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 13656862 - 13656680
Alignment:
| Q |
25 |
gaattgaagcttagggtaacattgtgaaattgatttaacatcatcattcaaattaatgagtctgttgtggatgtactcagtgtttaggaatgttatgtga |
124 |
Q |
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| T |
13656862 |
gaattgaagcttagggtaacattctaaaagagcttgaatatcatcattgaattgtatgagtcggttatggatgtatttggtgttgagaaaagtgatgtag |
13656763 |
T |
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| Q |
125 |
agattttgaattaaaagaagttcagctagcttgagcattgtgtttacatggccttgtgctggacatgggaagattaacacatg |
207 |
Q |
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| T |
13656762 |
atgttttgaattgcaagaagttcagctagctttagcattggatttacatggccttgtgctggacatgggaagattagcacatg |
13656680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 321 - 448
Target Start/End: Original strand, 5744724 - 5744851
Alignment:
| Q |
321 |
ttgtagaaacactacttttgtttagtaaaatctatatcgtaagtgggatgaaaaatgagtatattgttaatatatttcgaactcgtgatttttattgatt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5744724 |
ttgtagaaacactacttttgtttagtaaaatctatatcgtaagtgggatgaaaaatgagtatattgttaatatatttcgaactcgtgatttttattgatt |
5744823 |
T |
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| Q |
421 |
aatttttcttcttcttttgatgatgatg |
448 |
Q |
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| T |
5744824 |
aattttttttcttcttttgatgatgatg |
5744851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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