View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1363_high_1 (Length: 566)
Name: NF1363_high_1
Description: NF1363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1363_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 23 - 483
Target Start/End: Complemental strand, 1906021 - 1905555
Alignment:
| Q |
23 |
aatttggttaaaaatgactgaaataaagtcattcatgttaggatgtttttacataaaacaaatttgatgtaaaacacaattttcaaactttcatcacata |
122 |
Q |
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| T |
1906021 |
aatttggttaaaaatgactgaaataaagtcattcatgttaggatgtttttacataaaacaaatttgatgtaaaacacaattttcaaactttcatcacata |
1905922 |
T |
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| Q |
123 |
tagtcaaagtt-----ggactcag-caaaatcaattttaaggaagaaatcaaaatcctattggatcataggaaactcacgtttcataacccgtggccgtg |
216 |
Q |
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| T |
1905921 |
tagtccaagtttcataggaataaatcaaaatcaattttaaggaagaaatcaaaattctattggatcataggaaactcacgtttcataacccgtggccgtg |
1905822 |
T |
|
| Q |
217 |
gtgtatcgacatacacacttcgagctgaacgactttcatcacctgatctttcctccctttcccacggtgaaccaccaaccctcatggataatttggttca |
316 |
Q |
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| T |
1905821 |
gtgcatcgacatacacacttcgagctgaacgactttcatcacctgatctttcctccctttcccacggtgaaccaccaaccctcatggataatttggttca |
1905722 |
T |
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| Q |
317 |
agtatgcttcacagaagacaaattaagcataaatcataatgtactgcatgtatttccagaattcttgtagtaaaatattggtccgggaacaagcattaat |
416 |
Q |
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| T |
1905721 |
agtatgcttcacagaagacaaattaagcataaatcataatgtactgcatgtatttccagaattcttgtagtaaaatattggtccgggaacaagcattaat |
1905622 |
T |
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| Q |
417 |
ttacttgcgttttagctatccttaatcctttgattgggggaatgagccatctagtacctttactacc |
483 |
Q |
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| T |
1905621 |
ttacttgcgttttagctatccttaatcctttgattgggggaatgagccatctagtacctttactacc |
1905555 |
T |
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