View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1363_low_1 (Length: 642)
Name: NF1363_low_1
Description: NF1363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1363_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 140 - 627
Target Start/End: Original strand, 52582283 - 52582781
Alignment:
| Q |
140 |
gttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataatattct |
239 |
Q |
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| T |
52582283 |
gttactaatctaaagagcatcataagtcatgaatttcaaaaactgtaaattcacctgaagacacattggatcattttgtcatgttacataataatattct |
52582382 |
T |
|
| Q |
240 |
ctcctgattttgaaatttctcaaacaaaattctttctatcttcatag--------attcacttctaagtcctaatcctccacagtgacatcttcccttga |
331 |
Q |
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| T |
52582383 |
ctcctgattttgaaatttctcaaacaaaattctttttatcttcataggttatataattcacttctaagtcctaatcctccacagtgctatcttcccttga |
52582482 |
T |
|
| Q |
332 |
cataaaattgttagctggtgggttggagtcttccgaagagtctccaaactcttctttgtacatttcttctatcattggtttccatagccgtacccttgca |
431 |
Q |
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| T |
52582483 |
cataaaattgttagctggcgggttggagtcttccgaagagtctccaaactcttctttgtacatttcttctatcattggtttccatagccgtacccttgca |
52582582 |
T |
|
| Q |
432 |
ttaatgaaccagtttgacacctgaaccaacactccatacatcaacaacatgaccatcataaataactttg---nnnnnnnnnnnnncactcaagttaatg |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
52582583 |
ttaatgaaccagtttgacacctgaaccaacactccatacatcaacaacatgaccatcataaataactttggaaaaaaaaaaaaaaaccctcaagttaatg |
52582682 |
T |
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| Q |
529 |
tttgaagtgttttattttgtcggaatttatcgacgtgcactatatgtgattgttgtaaatttgagaccctaactcgattcctacccataaaagaaaaag |
627 |
Q |
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| T |
52582683 |
tttgaagtgttttattttgtcggaatttatcgacgtgcactgtatgtgattgttgtaaatttgagaccctaacttgattcctacccataaaagaaaaag |
52582781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 52590698 - 52590775
Alignment:
| Q |
378 |
aactcttctttgtacatttcttctatcattggtttccatagccgtacccttgcattaatgaaccagtttgacacctga |
455 |
Q |
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|||||||||||||| |||||||| | |||||||||||| || || || | ||||||||||||||| |||| ||||||| |
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| T |
52590698 |
aactcttctttgtatatttcttcaaccattggtttccaaagacgcacacgtgcattaatgaaccaatttgccacctga |
52590775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 7301660 - 7301740
Alignment:
| Q |
375 |
ccaaactcttctttgtacatttcttctatcattggtttccatagccgtacccttgcattaatgaaccagtttgacacctga |
455 |
Q |
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| T |
7301660 |
ccaaactcttctttgtacatttcttcgaccattggtttccaaagacgcaccctcgcattaatgaaccaattcgccacctga |
7301740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 6084577 - 6084639
Alignment:
| Q |
393 |
atttcttctatcattggtttccatagccgtacccttgcattaatgaaccagtttgacacctga |
455 |
Q |
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|||||||| | |||||||||||| |||| ||| |||||||| |||||||| |||||||||||| |
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| T |
6084577 |
atttcttccaccattggtttccaaagccttactcttgcatttatgaaccaatttgacacctga |
6084639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 33462901 - 33462834
Alignment:
| Q |
389 |
gtacatttcttctatcattggtttccatagccgtacccttgcattaatgaaccagtttgacacctgaa |
456 |
Q |
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|||||| ||||||| ||| |||||||| | || ||||| |||||||||||||||||||| ||||||| |
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| T |
33462901 |
gtacatatcttctaccatgggtttccacaatcgaaccctagcattaatgaaccagtttgatacctgaa |
33462834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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