View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1363_low_10 (Length: 279)
Name: NF1363_low_10
Description: NF1363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1363_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 8016751 - 8016543
Alignment:
| Q |
34 |
agatacctcatttgctttgcaatgaaagcttctatcgtacgctgaaactcttcattactcagcttatcctccggatacaaaacttccctcaccttctcct |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8016751 |
agatacctcatttgctttgcaatgaaagcttctatcgtacgctgaaactcttcattacttagcttatcctccggatacaaaacttccctcaccttctcct |
8016652 |
T |
|
| Q |
134 |
tctccggcagagactgacttcgactataaacctttcttcccaagttaccagaacctgttgcatagcatgaatctatatcatccttagaactgtccttaat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8016651 |
tctccggcagagactgacttcgactataaacctttcttcccaagttaccagaacctgttgcatagcatgaatctatatcatccttagaactgtccttaat |
8016552 |
T |
|
| Q |
234 |
ctgttcatc |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
8016551 |
ctgttcatc |
8016543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University