View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1363_low_15 (Length: 201)

Name: NF1363_low_15
Description: NF1363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1363_low_15
NF1363_low_15
[»] chr8 (4 HSPs)
chr8 (20-166)||(15151308-15151454)
chr8 (20-172)||(19442385-19442537)
chr8 (20-172)||(19578536-19578688)
chr8 (85-158)||(16822006-16822079)
[»] chr2 (7 HSPs)
chr2 (21-172)||(17673369-17673520)
chr2 (20-160)||(1644616-1644756)
chr2 (21-160)||(17628298-17628437)
chr2 (20-166)||(19569582-19569728)
chr2 (20-172)||(37081281-37081433)
chr2 (20-148)||(3563566-3563694)
chr2 (20-107)||(24578685-24578772)
[»] chr4 (3 HSPs)
chr4 (20-157)||(17405102-17405239)
chr4 (22-172)||(2946654-2946804)
chr4 (47-172)||(6136096-6136221)
[»] chr1 (4 HSPs)
chr1 (20-172)||(2900405-2900554)
chr1 (22-172)||(28538500-28538650)
chr1 (20-166)||(27908301-27908447)
chr1 (85-172)||(23971060-23971147)
[»] chr3 (2 HSPs)
chr3 (32-154)||(9021746-9021868)
chr3 (91-143)||(25226627-25226679)
[»] chr7 (2 HSPs)
chr7 (76-166)||(4633993-4634083)
chr7 (85-158)||(32238918-32238991)
[»] chr5 (4 HSPs)
chr5 (63-172)||(15023568-15023677)
chr5 (20-159)||(21714326-21714465)
chr5 (20-159)||(13502398-13502537)
chr5 (20-159)||(21788240-21788380)
[»] chr6 (2 HSPs)
chr6 (77-166)||(27991531-27991620)
chr6 (101-165)||(13627831-13627895)
[»] scaffold0010 (1 HSPs)
scaffold0010 (91-143)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 15151454 - 15151308
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||||||||||    
T  15151454 tctttagttaattaaacttgtcgagtgaagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttatacttgtgtt 15151355  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 166  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  15151354 cttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 19442537 - 19442385
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||||||||    
T  19442537 tctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgtt 19442438  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    | | | ||| ||| ||||||||||||||||||||| ||| | ||||| |||||    
T  19442437 catatcgcacaatatcaaatgaaatgtttaatagtattttcattcatttctct 19442385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 19578688 - 19578536
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||||||||    
T  19578688 tctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatacttgtgtt 19578589  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    | | | ||| ||| ||||||||||||||||||||| ||| | ||||| |||||    
T  19578588 catatcgcacaatatcaaatgaaatgtttaatagtattttcattcatttctct 19578536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 16822079 - 16822006
Alignment:
Q  85 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 158  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttt 16822006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 17673369 - 17673520
Alignment:
Q  21 ctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttc 120  Q
    ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || |||||||||    
T  17673369 ctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgcttgtgttc 17673468  T
Q  121 ttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    |||||||| || |||||||||||||||| ||||||||||| ||||| |||||    
T  17673469 ttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcatttctct 17673520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 1644756 - 1644616
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||| ||||  ||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||||||| |||| | || |    
T  1644756 tctttagttaattaaacttgtcgagcgaagtctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacctatgct 1644657  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttcc 160  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  1644656 cttcttgcacaatgtcaaatgaaatgtttaatagtctttcc 1644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 17628298 - 17628437
Alignment:
Q  21 ctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttc 120  Q
    ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || |||||||||    
T  17628298 ctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgcttgtgttc 17628397  T
Q  121 ttcttgcataatgtcaaatgaaatgtttaatagtctttcc 160  Q
    |||||||| || |||||||||||||||| |||||||||||    
T  17628398 ttcttgcacaacgtcaaatgaaatgtttcatagtctttcc 17628437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 19569728 - 19569582
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| | |||||||||| | |||||  | ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| |||||||    
T  19569728 tctttagttaattaaactagtcgagtgaaacctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatttgtgtt 19569629  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 166  Q
     |||||||| ||||||||||||||||||||||||||||||| |||||    
T  19569628 tttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcat 19569582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 37081281 - 37081433
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||| ||||| |||| ||||||||| ||||| | ||| ||||||  ||  |||||||| |||  |||||||||| ||||||| |||||||||||    
T  37081281 tctttagttagttaaacttgttgagtgaagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatacttgtgtt 37081380  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    ||||||||| ||| | |||| |||||||| ||||||||||||||||| |||||    
T  37081381 cttcttgcacaatataaaataaaatgtttgatagtctttccgttcatttctct 37081433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 3563694 - 3563566
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||  ||||  || ||||||||||||| ||||||||| |||| ||| | |||| ||||||| ||||||||| |    
T  3563694 tctttagttaattaaacttgtcgagtgaagtctagagtcttgaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtgct 3563595  T
Q  120 cttcttgcataatgtcaaatgaaatgttt 148  Q
    ||||||| | |||||| ||||||||||||    
T  3563594 cttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 24578772 - 24578685
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatt 107  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||||||||| || ||||||||| ||||  ||||||||| |||||||    
T  24578772 tctttagttaattaaatttgtcgagtgaaacctagactctggaacatggattctagcttagagctaattatttcacatttcaaagatt 24578685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 17405102 - 17405239
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||| ||||   |||||||||||||||  |||||||| |||| ||||||| || ||| ||| |||||||||||    
T  17405102 tctttagttaattaaacttgtcgagtgaagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgtgtt 17405201  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctt 157  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  17405202 cttcttgcacaatgtcaaatgaaatgtttaatagtctt 17405239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 2946804 - 2946654
Alignment:
Q  22 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 121  Q
    |||||||||||||| |||||||||||||| ||||| || |||||| |||| | | ||||||| |||| | || ||||| ||||||| |||| ||||||||    
T  2946804 tttagttaattaaaattgtcgagtgaagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcatacatgtgttct 2946705  T
Q  122 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||| |||||    
T  2946704 tcttgcacaatgtcaaatgaaatgttaaatagtctttccattcatttctct 2946654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 6136221 - 6136096
Alignment:
Q  47 aagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 146  Q
    |||| ||||| |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  6136221 aagcctagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgt 6136122  T
Q  147 ttaatagtctttccgttcatctctct 172  Q
    |||||||||||||| ||||| |||||    
T  6136121 ttaatagtctttccattcatttctct 6136096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 2900554 - 2900405
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||||||||||||  |||||  || |||||||||||| ||||||||| |||| |||  ||||| ||||||||||||||||||     
T  2900554 tctttagttaattaaacttgtcgagtgaagtctagactttgtaacatggatcctagcttagagctaattggttgtcatttcaaagatttatacttgtgt- 2900456  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
      ||||||| ||||||||||||||||||||||||||||||| ||||| |||||    
T  2900455 --tcttgcacaatgtcaaatgaaatgtttaatagtctttccattcatttctct 2900405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 28538650 - 28538500
Alignment:
Q  22 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 121  Q
    |||||||||||||| ||||| |||||||| ||||| |  ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||    
T  28538650 tttagttaattaaacttgtcaagtgaagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttct 28538551  T
Q  122 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    ||| ||| ||||||||||||||||||| ||| ||||||| ||||| |||||    
T  28538550 tctagcacaatgtcaaatgaaatgtttcataatctttccattcatttctct 28538500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 27908447 - 27908301
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||| ||||||||  ||||   ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||||||||    
T  27908447 tctttagttaattaaacttgtagagtgaagtctagattttggaacatggatcctagcttagagctaattggttcacatttcaaatattcatacttgtgtt 27908348  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 166  Q
    ||| ||||| ||||| ||||||||| |||| || ||||||| |||||    
T  27908347 cttgttgcacaatgtgaaatgaaatatttattaatctttccattcat 27908301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 23971060 - 23971147
Alignment:
Q  85 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatctctct 172  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcatttctct 23971147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 9e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 9021746 - 9021868
Alignment:
Q  32 taaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataa 131  Q
    |||| |||||||||||||| ||||| |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||    
T  9021746 taaacttgtcgagtgaagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaa 9021845  T
Q  132 tgtcaaatgaaatgtttaatagt 154  Q
    |||||||||||||||||||||||    
T  9021846 tgtcaaatgaaatgtttaatagt 9021868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  91 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 143  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 76 - 166
Target Start/End: Original strand, 4633993 - 4634083
Alignment:
Q  76 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 166  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 32238918 - 32238991
Alignment:
Q  85 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttt 158  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttt 32238991  T

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Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 15023568 - 15023677
Alignment:
Q  63 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 162  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  163 tcatctctct 172  Q
    |||| |||||    
T  15023668 tcatatctct 15023677  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 21714465 - 21714326
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    ||||| |||||||||| |||| ||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| |||||||||||    
T  21714465 tctttcgttaattaaacttgtagagtgaagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatacttgtgtt 21714366  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttc 159  Q
    |||| |||| ||| ||||||||||| ||||||||||||||    
T  21714365 cttcatgcacaatatcaaatgaaatatttaatagtctttc 21714326  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 13502398 - 13502537
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgtt 119  Q
    |||||||||||||||| |||| ||||||||| |||||  |||||||   ||||| |||||| || ||||  ||||||||| ||| ||| |||||||||||    
T  13502398 tctttagttaattaaacttgtagagtgaagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatacttgtgtt 13502497  T
Q  120 cttcttgcataatgtcaaatgaaatgtttaatagtctttc 159  Q
    ||||||||| ||| || ||| |||| |||||||| |||||    
T  13502498 cttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 21788380 - 21788240
Alignment:
Q  20 tctttagttaattaaatttgtcgagtgaagca-tagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgt 118  Q
    ||||| |||||||||| |||| |||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| ||||||||||    
T  21788380 tctttcgttaattaaacttgtagagtgaagcactagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatacttgtgt 21788281  T
Q  119 tcttcttgcataatgtcaaatgaaatgtttaatagtctttc 159  Q
    ||||| |||| ||| ||||||||||| ||||||||| ||||    
T  21788280 tcttcatgcacaatatcaaatgaaatatttaatagtttttc 21788240  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 27991531 - 27991620
Alignment:
Q  77 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcat 166  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcat 27991620  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 13627895 - 13627831
Alignment:
Q  101 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttca 165  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || ||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  91 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 143  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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