View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1363_low_5 (Length: 370)

Name: NF1363_low_5
Description: NF1363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1363_low_5
NF1363_low_5
[»] chr5 (2 HSPs)
chr5 (89-292)||(9394467-9394671)
chr5 (111-167)||(9393947-9394002)
[»] chr7 (2 HSPs)
chr7 (162-290)||(1342082-1342210)
chr7 (113-161)||(1342018-1342067)
[»] chr6 (1 HSPs)
chr6 (197-292)||(31944088-31944183)
[»] chr2 (1 HSPs)
chr2 (197-292)||(35535401-35535496)
[»] chr4 (1 HSPs)
chr4 (197-282)||(5644293-5644378)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 89 - 292
Target Start/End: Original strand, 9394467 - 9394671
Alignment:
Q  89 ataacataaaaacacagttgccagcatgcaatcaaagaaataaaccctaaa-catcaaattttcaacaagaaatcaaaaacagaaatttatgaacattat 187  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9394467 ataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaacaagaaatcaaaaacagaaatttatgaacattat 9394566  T
Q  188 atgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9394567 atgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaactttgccttcaaactt 9394666  T
Q  288 tcatc 292  Q
    |||||    
T  9394667 tcatc 9394671  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 9393947 - 9394002
Alignment:
Q  111 agcatgcaatcaaagaaataaaccctaaacatcaaattttcaacaagaaatcaaaaa 167  Q
    |||||| |||||||||||| || |||||| | ||||||||||||| |||||||||||    
T  9393947 agcatgaaatcaaagaaatgaatcctaaa-accaaattttcaacatgaaatcaaaaa 9394002  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 1342082 - 1342210
Alignment:
Q  162 caaaaacagaaatttatgaacattatatgaaatagaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcac 261  Q
    ||||| || |||||||| ||||||  || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  1342082 caaaagcacaaatttatcaacatttaataaaataaaatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttcgcttcat 1342181  T
Q  262 ggtagtgaaacttcgccttcaaactttca 290  Q
    | |||||||||||||||||||||||||||    
T  1342182 gatagtgaaacttcgccttcaaactttca 1342210  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 1342018 - 1342067
Alignment:
Q  113 catgcaatcaaagaaataaaccct-aaacatcaaattttcaacaagaaat 161  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| |||||    
T  1342018 catgcaatcaaagaaataaaccctaaaacaccaaaatttcaacatgaaat 1342067  T

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Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 31944088 - 31944183
Alignment:
Q  197 aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactttcatc 292  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||    
T  31944088 aatagaaaccttgacataagcattatcgtccagcttatacaaaatcccatcaactttcgcttcacggtagtgaaacttcgccttgaaactttcatc 31944183  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 292
Target Start/End: Original strand, 35535401 - 35535496
Alignment:
Q  197 aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttcaaactttcatc 292  Q
    ||||||||||||||||||||||||||  ||||| ||||||| || ||||||||| || ||||||||||| ||||||| ||||||||||||||||||    
T  35535401 aatagaaaccttgacataagcattattatccagattatatataaccccatcaactttcgcttcacggtaatgaaactacgccttcaaactttcatc 35535496  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 5644293 - 5644378
Alignment:
Q  197 aatagaaaccttgacataagcattatcctccagcttatataaaatcccatcaaccttggcttcacggtagtgaaacttcgccttca 282  Q
    ||||| |||||| |||||||||||||| | ||||||||||| || ||||||||| ||  |||||||||| ||||||||||||||||    
T  5644293 aataggaaccttaacataagcattatcattcagcttatatataaccccatcaacattcacttcacggtaatgaaacttcgccttca 5644378  T

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