View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1364-INSERTION-5 (Length: 87)
Name: NF1364-INSERTION-5
Description: NF1364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1364-INSERTION-5 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 9e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-36
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 11040778 - 11040857
Alignment:
| Q |
8 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagttggtacaatgggtagaatacaccatgttaa |
87 |
Q |
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| T |
11040778 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagtgggtacaatgggtagaatacaccatgttaa |
11040857 |
T |
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Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 11026075 - 11026154
Alignment:
| Q |
8 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagttggtacaatgggtagaatacaccatgttaa |
87 |
Q |
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| T |
11026075 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagttggtacaatgagtagaatccaccatgttaa |
11026154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 10930415 - 10930494
Alignment:
| Q |
8 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagttggtacaatgggtagaatacaccatgttaa |
87 |
Q |
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| T |
10930415 |
aagatactaaatgtttcacaaggaaacgggcaagatttcctcaatgaagttggtacaatgggtagaatccatcatgttaa |
10930494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 10992619 - 10992698
Alignment:
| Q |
8 |
aagatactaaatgtttctcagggaaatggccaagacttcctaaatgaagttggtacaatgggtagaatacaccatgttaa |
87 |
Q |
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| T |
10992619 |
aagatactaaatttttctcaaggaaacgggcaagatttcctcaatgaagttggtacaattggtagaacccatcatgttaa |
10992698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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