View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13640_high_13 (Length: 203)
Name: NF13640_high_13
Description: NF13640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13640_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 2690791 - 2690615
Alignment:
| Q |
10 |
tccaagaatatctgacttttgcttggcccagatatttggtggaaaccagaatgaagccagtacaaccagagtcgttggttcacagtaagtatacttcggt |
109 |
Q |
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| T |
2690791 |
tccaaaaatatctgacttttgcttggcccagatatttggtggaaaccagaatgaagccagtacaaccagagtcgttggttcacagtaagtatacttcggt |
2690692 |
T |
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| Q |
110 |
tttgtttttaagctcattcagccacttgttcattcttacttaaagttgactaatctcaactacttaactctactttt |
186 |
Q |
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| T |
2690691 |
tttgtttttaagctcattcagccacttgttcattcttacttaaagttgactaatctcaactacttaactctactttt |
2690615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 2698527 - 2698402
Alignment:
| Q |
10 |
tccaagaatatctgacttttgcttggcccagatatttggtggaaaccagaatgaagccagtacaaccagagtcgttggttcacagtaagtatacttcggt |
109 |
Q |
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| T |
2698527 |
tccaaaaatatctgactttggcttggcccggatattcggtggaaatcaaaatgaagagaatgcaaccaaagtggttggtacatagtaagtatactttgcc |
2698428 |
T |
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| Q |
110 |
tttgtttttaagctcattcagccact |
135 |
Q |
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| T |
2698427 |
cttgtttttaccctcattcagtcact |
2698402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 3e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 3e-65
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 14519946 - 14519785
Alignment:
| Q |
10 |
tccaagaatatctgacttttgcttggcccagatatttggtggaaaccagaatgaagccagtacaaccagagtcgttggttcacagtaagtatacttcggt |
109 |
Q |
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| T |
14519946 |
tccaaaaatatctgactttggcttggcccggatatttggtggaaaccagaatgaatccaatacaaccagagtcgttggtacatagtaagtatacttcgat |
14519847 |
T |
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| Q |
110 |
tttgtttttaagctcattcagccacttgttcattcttacttaaagttgactaatctcaacta |
171 |
Q |
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| T |
14519846 |
tttgtttttaagctcattcagccacttgttcattcttacttcaagttgactaatctcaacta |
14519785 |
T |
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