View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13640_low_1 (Length: 447)
Name: NF13640_low_1
Description: NF13640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13640_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 51318871 - 51319293
Alignment:
| Q |
19 |
aatcatgtaccttaaaccatgactcatcactgtgaattagaagatcttgatttatatgaggtgatccaaatcttcctttagaaacaaactttccagccaa |
118 |
Q |
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| T |
51318871 |
aatcatgtaccttaaaccatgactcatcactgtgaattagaagatcttgatgtatatgaggtgatccaaatcttcctttagaaacaaactttccagccaa |
51318970 |
T |
|
| Q |
119 |
gtgaagaacattgtttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51318971 |
gtgaagaacattgtttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaagttcttgtcggtgt |
51319070 |
T |
|
| Q |
219 |
aaaatcgcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgccta |
318 |
Q |
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| T |
51319071 |
aaaatcgcaacgtgaagtaaactttgcccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgccta |
51319170 |
T |
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| Q |
319 |
attgtgctgcatcaaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctcaaacaatactcttacaagatcttt |
418 |
Q |
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| T |
51319171 |
actgtgctgcatcaaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccattctctcaaacaatactcttacaagatcttt |
51319270 |
T |
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| Q |
419 |
gtagcaaggagcattttcttcga |
441 |
Q |
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| T |
51319271 |
gtagcaaggagcattttcttcga |
51319293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 105 - 353
Target Start/End: Original strand, 51342776 - 51343024
Alignment:
| Q |
105 |
aactttccagccaagtgaagaacattgtttccctcctgatcaacaatttgcaccaaaacatttttgtatgaacccttgctcaatattagatggtacacaa |
204 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| | |||||| |||||||| |||||||||||||| | ||||||| | | || ||| |
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| T |
51342776 |
aactttccagccaagtgaagaatattgtttccctcgagatcaatatgttgcactaaaacattcttgtatgaaccctttgtgaatattaaacgatatacac |
51342875 |
T |
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| Q |
205 |
gttcttgtcggtgtaaaatcgcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaat |
304 |
Q |
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| ||| | | ||| || |||| |||||||| ||||| |||| |||||||||||||| |||| ||||||||| |||||||| ||||| |||||||| |
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| T |
51342876 |
ttcctttcctatataagatagcaatgtgaagtatgctttgcccttttgaattgacttccatgaatagattcggattgtagttgaagataaaatctaaaat |
51342975 |
T |
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| Q |
305 |
taagatgttgcctaattgtgctgcatcaaacattgcttttgaagttttt |
353 |
Q |
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| T |
51342976 |
tataatgtttcctgattttgctgcctcaaacattgcttttgaagttttt |
51343024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 51312728 - 51312826
Alignment:
| Q |
230 |
gtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgc |
328 |
Q |
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||||||||| |||| |||| || ||||||||||||||| | ||| || |||||||| |||||||||| ||||| | |||||| ||| ||| |||||| |
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| T |
51312728 |
gtgaagtaagttttgcccttgaggattgacttccataaacaaattggggttatagttaaaaataaattttaaaaccatgatgtttcctgattttgctgc |
51312826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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