View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13640_low_7 (Length: 266)

Name: NF13640_low_7
Description: NF13640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13640_low_7
NF13640_low_7
[»] chr5 (3 HSPs)
chr5 (10-131)||(42507550-42507671)
chr5 (10-131)||(42523723-42523844)
chr5 (10-131)||(42517071-42517190)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 42507671 - 42507550
Alignment:
Q  10 aacaaaatcaatatagcaattatgcaataccctaaggcctccggtagaaccatgttgcctagttattaatgagaatcgatccacaccaaccaacatctag 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42507671 aacagaatcaatatagcaattatgcaataccctaaggcctccggtagaaccatgttgcctagttattaatgagaatcgatccacaccaaccaacatctat 42507572  T
Q  110 aaaagaaaattggtttatttta 131  Q
    ||||||||||||||||||||||    
T  42507571 aaaagaaaattggtttatttta 42507550  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 42523844 - 42523723
Alignment:
Q  10 aacaaaatcaatatagcaattatgcaataccctaaggcctccggtagaaccatgttgcctagttattaatgagaatcgatccacaccaaccaacatctag 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42523844 aacagaatcaatatagcaattatgcaataccctaaggcctccggtagaaccatgttgcctagttattaatgagaatcgatccacaccaaccaacatctat 42523745  T
Q  110 aaaagaaaattggtttatttta 131  Q
    ||||||||||||||||||||||    
T  42523744 aaaagaaaattggtttatttta 42523723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 42517190 - 42517071
Alignment:
Q  10 aacaaaatcaatatagcaattatgcaataccctaaggcctccggtagaaccatgttgcctagttattaatgagaatcgatccacaccaaccaacatctag 109  Q
    |||| |||||||||||||| |||||||||||||||| |||||  |||||||||||||||| |||||||| || |||||||| |||||||||||||||||     
T  42517190 aacagaatcaatatagcaactatgcaataccctaagtcctccaatagaaccatgttgcctcgttattaaagaaaatcgatcaacaccaaccaacatctac 42517091  T
Q  110 aaaagaaaattggtttatttta 131  Q
    |||  |||||||||||||||||    
T  42517090 aaa--aaaattggtttatttta 42517071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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