View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13641_high_1 (Length: 808)
Name: NF13641_high_1
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 17 - 792
Target Start/End: Complemental strand, 44377415 - 44376646
Alignment:
| Q |
17 |
ttggtttgccttgtatcatatctgtagtctcaaaacaaatgatggtttcattgcatttgcttgtggtgttttgaatcttgttggtacagagggactatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377415 |
ttggtttgccttgtatcatatctgtagtctcaaaacaaatgatggtttcattgcatttgcttgtggtgttttgaatcttgttggtacagagggactatga |
44377316 |
T |
|
| Q |
117 |
agagttaaaagtgaggattaatgcattggttgcaatggcgcaaaaggttcctgaggatggatggacaatgcaagatgggacaccttggcctggaaacaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377315 |
agagttaaaagtgaggattaatgcattggttgcaatggcgcaaaaggttcctgaggatggatggacaatgcaagatgggacaccttggcctggaaacaat |
44377216 |
T |
|
| Q |
217 |
gtcaacgatcatcctggaatgattcaggtgagtagcgttatatgatactacttcaatccaaattggctgtgnnnnnnnggaaaaagttcaagtatgatgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44377215 |
gtcaacgatcatcctggaatgattcaggtgagtagcgttatatgatactacttcaatccaaattggctgtgtttttttggaaaaagttcaagtatgatgt |
44377116 |
T |
|
| Q |
317 |
acttgtgcaggttttccttggacaaaatggtgttcgtgatattgatgggaacgagttacctcgtcttgtttatgtgtctcgtgaaaaaagacctggattc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44377115 |
acttgtgcaggttttccttggacaaaatggtgttcgcgatattgatgggaacgagttacctcgtcttgtttatgtgtctcgtgaaaaaagacctggattc |
44377016 |
T |
|
| Q |
417 |
gaacaccacaaaaaagctggtgctatgaatgccttggtagagtctcccnnnnnnnnnnnnnngtcttgcagataaattttttggattactcatgccattt |
516 |
Q |
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| T |
44377015 |
gaacaccacaaaaaagctggtgctatgaatgccttggtagagtctccc------ctctctctgtcttgcagataaattttttggattactcatgccattt |
44376922 |
T |
|
| Q |
517 |
aattttcctgaccaatttgtgnnnnnnnnatcaaggtgcgagtctcggcagtcatatcaaatgctccttacatgctaaatgttgattgtgaccactacat |
616 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44376921 |
aattttcctgaccaatttgtgttttttttatcaaggtgcgagtctcggcagtcatatcaaatgctccttacatgctaaatgttgattgtgaccactacat |
44376822 |
T |
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| Q |
617 |
aaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatcctacatcagggnnnnnnntatgctatgtgcaatttcctcaaagatttgatgga |
716 |
Q |
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| T |
44376821 |
aaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatcctacatcagggaaaaaaatatgctatgtgcaatttcctcaaagatttgatgga |
44376722 |
T |
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| Q |
717 |
attgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgtgagtaagaatttattgttgacttatg |
792 |
Q |
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| T |
44376721 |
attgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgtgagtaagaatttattgttgacttatg |
44376646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 38720769 - 38720620
Alignment:
| Q |
96 |
gttggtacagagggactatgaagagttaaaagtgaggattaatgcattggttgcaatggcgcaaaaggttcctgaggatggatggacaatgcaagatggg |
195 |
Q |
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|||| ||||||| || |||||||| || || |||||||||||| ||||| |||| ||| || |||||||| |||||||||||||| ||||| |||||| |
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| T |
38720769 |
gttgttacagagagattatgaagaatttaaggtgaggattaatagtttggtggcaacggcacagaaggttcccgaggatggatggactatgcaggatggg |
38720670 |
T |
|
| Q |
196 |
acaccttggcctggaaacaatgtcaacgatcatcctggaatgattcaggt |
245 |
Q |
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|| || ||||||||||| |||| | ||||||||||| ||||||||||| |
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| T |
38720669 |
actccgtggcctggaaatgatgtgagggatcatcctggcatgattcaggt |
38720620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 766
Target Start/End: Complemental strand, 38720061 - 38719979
Alignment:
| Q |
684 |
tgctatgtgcaatttcctcaaagatttgatggaattgatcgtcatgatagatactcaaatcgtaatgttgtattctttgatgt |
766 |
Q |
| |
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|||||||| |||||||| ||||||||||||||||||||| | ||||| |||||||| || | ||||||||||| |||||||| |
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| T |
38720061 |
tgctatgtacaatttccacaaagatttgatggaattgatagacatgacagatactccaacagaaatgttgtattttttgatgt |
38719979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 446
Target Start/End: Complemental strand, 38720413 - 38720291
Alignment:
| Q |
324 |
caggttttccttggacaaaatggtgttcgtgatattgatgggaacgagttacctcgtcttgtttatgtgtctcgtgaaaaaagacctggattcgaacacc |
423 |
Q |
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||||| |||||||| || |||||||||||||| |||| || || ||||||||||| | |||||||| ||| | |||||||| ||||| || || |||| |
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| T |
38720413 |
caggtcttccttggtcatgatggtgttcgtgatgttgagggaaatgagttacctcgcttagtttatgtttctagagaaaaaaggcctgggtttgatcacc |
38720314 |
T |
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| Q |
424 |
acaaaaaagctggtgctatgaat |
446 |
Q |
| |
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||||||| ||||| || |||||| |
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| T |
38720313 |
acaaaaaggctggagccatgaat |
38720291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 13825952 - 13825890
Alignment:
| Q |
183 |
aatgcaagatgggacaccttggcctggaaacaatgtcaacgatcatcctggaatgattcaggt |
245 |
Q |
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|||||||||||| ||||| ||||||||||| ||||||| || ||||| |||||||| ||||| |
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| T |
13825952 |
aatgcaagatggtacaccgtggcctggaaataatgtcagagaccatccgggaatgatccaggt |
13825890 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 684 - 736
Target Start/End: Original strand, 15172142 - 15172194
Alignment:
| Q |
684 |
tgctatgtgcaatttcctcaaagatttgatggaattgatcgtcatgatagata |
736 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
15172142 |
tgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatagata |
15172194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 245
Target Start/End: Complemental strand, 49591871 - 49591795
Alignment:
| Q |
169 |
gaggatggatggacaatgcaagatgggacaccttggcctggaaacaatgtcaacgatcatcctggaatgattcaggt |
245 |
Q |
| |
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||||| || ||||||||||| ||||| || |||||||||||||| ||| || ||||||||||||||||||||||| |
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| T |
49591871 |
gaggaaggttggacaatgcaggatggaactccttggcctggaaataatcccagggatcatcctggaatgattcaggt |
49591795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 49591659 - 49591586
Alignment:
| Q |
381 |
cttgtttatgtgtctcgtgaaaaaagacctggattcgaacaccacaaaaaagctggtgctatgaatgccttggt |
454 |
Q |
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||||||||||||||||||||||| |||| || ||| |||| ||||| || ||||| ||||||||||| ||||| |
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| T |
49591659 |
cttgtttatgtgtctcgtgaaaagcgaccaggcttccaacatcacaagaaggctggagctatgaatgctttggt |
49591586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 666
Target Start/End: Complemental strand, 43435502 - 43435434
Alignment:
| Q |
598 |
ttgattgtgaccactacataaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatccta |
666 |
Q |
| |
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|||||||||| ||||||||||||||||| |||||| | | ||||| ||||| || ||||||||||||| |
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| T |
43435502 |
ttgattgtgatcactacataaacaacagcaaggccttgagggaagctatgtgctttatgatggatccta |
43435434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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