View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13641_high_3 (Length: 460)
Name: NF13641_high_3
Description: NF13641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13641_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Original strand, 25127794 - 25128218
Alignment:
| Q |
14 |
catcacctgcgtaaatattattgaataggtgaaaacatagtaagaaaatacactatgatgaaagataattggaactgaagatatgtaccatgtcaattcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127794 |
catcacctgcgtaaatattattgaataggtgaaaacatagtaagaaaatacactatgatgaaagataattggaactgaagatatgtaccatgtcaattcc |
25127893 |
T |
|
| Q |
114 |
agcattgacggcagaggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcccagtcggaaatcacaaaaccctacagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25127894 |
agcattgacggcagaggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcccagtcggaaatcacaaaaccctacagc |
25127993 |
T |
|
| Q |
214 |
agcaattgtcaataatatgcacnnnnnnntataatagtagctaatattgcaaaaaatttggtacatactttaaaagcatattgatgcaaaagcaacttga |
313 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25127994 |
agcaattgtcaataatatgcacaaaaaaatataatagtagctaatattgcaaaaaatttggtacatactttgaaagcatattgatgcaaaagcaacttga |
25128093 |
T |
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| Q |
314 |
agagttagtcagtgatagataatcagtcattttaccttaaaacctagtttttctttcaagatctcggttaaaagaaaatggtcggcatgaagtttgcgcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25128094 |
agagttagtcagtgatagataatcagtcattttaccttaaaacctagtttttctttcaagatttcggttaaaagaaaatggtcggcatgaagtttgcgcc |
25128193 |
T |
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| Q |
414 |
cattccagctagtataggacgccat |
438 |
Q |
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| T |
25128194 |
cattccagctagtataggacgccat |
25128218 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 29611767 - 29611643
Alignment:
| Q |
87 |
actgaagatatgtaccatgtcaattccagcattgacggcagaggagatgcagtaccgataatctgacccgtgaggtttacaaagtcggtcgagcccctcc |
186 |
Q |
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||||||||| ||||||||||||||||||||||| | | || ||||||||| || |||||||| ||||| | ||||| || | | || | |||||| |
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| T |
29611767 |
actgaagatctgtaccatgtcaattccagcattaattgaagtggagatgcaataacgataatcggacccataaggttggcataattcatcaattccctcc |
29611668 |
T |
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| Q |
187 |
cagtcggaaatcacaaaaccctaca |
211 |
Q |
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| T |
29611667 |
cagtcagaaatcacaaaaccctaca |
29611643 |
T |
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